| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is pqqL [C]
Identifier: 75674429
GI number: 75674429
Start: 261266
End: 262555
Strand: Direct
Name: pqqL [C]
Synonym: Nwi_0230
Alternate gene names: 75674429
Gene position: 261266-262555 (Clockwise)
Preceding gene: 75674428
Following gene: 75674430
Centisome position: 7.68
GC content: 63.41
Gene sequence:
>1290_bases ATGAGTGTCAATGTCACGAAGCTGTCGTCCGGCCTCACCGTCGTGACTGATGACATGCCACATCTGGAAACCGCCGCGCT CGGTGTCTGGACCGGAGTCGGCGGCCGTGACGAGAAGCCGGACGAGCACGGCATCTCTCACCTTCTCGAACATATGGCGT TCAAGGGCACCACCACGCGTTCGTCGCGGGCGATCGCCGAGGAGATCGAGGCCGTCGGCGGCGATCTCAACGCCGCTACC GGGGTCGAGACGACGGCTTATTACGCGCGGGTGATGAAGGCCGACGTTCCGCTCGCGCTCGATGTGTTGAGCGACATCCT GTCCAACCCGATCTTCGACGCAAAGGAGCTCGAATGCGAGAAGGGTGTCATCGAGCAGGAAATCGGTGCGGCGCAGGACA CCCCTGACGACGTCGTTTTCGAGCAACTCAACGAACTCTGTTATCCCGACCAGCCCATCGGCCGTTCGCTGCTCGGAACG CCCGAGACGCTGGAGCGATTCAACAGCGATATGCTGCATGGTTACCTCAAGACGCATTATCGCGGGCCGGACATGGTGGT GGCGGCGGCGGGTGCGATCGAGCATGGGATGGTTGTTGCCGAAGTCGAGCGCCGCTTTGCCGGTTTCGACGCCGCGCCGC CTCCGCAGCCGGCGGCGGCGACATTCGGCCACGGCGGCTCCAGGGTAGTGCATCGCGATTTGGAACAGGCGCATCTGACG TTGGCGCTGGAAGGGGTGCCGCAGACCGACGGCTCGCTGTTTTCCCTCCAGGTGTTCACCAGCGTTCTTGGGGGCGGCAT GTCCTCGCGACTGTTTCAGGAAGTTCGTGAGAAGCGCGGTCTGTGCTACTCGATCTATACTTTCCATGCACCCTATGCCG ACACCGGCCTGTTTGGGCTCTACACCGGCACCGATCCGAGCGACGCGCCTGAAATGATGGAAGTCATCGTCGACGTTATC AGCGAAGCCGTGGAAACGCTGACGGAAGCTGAGATCGCGCGCGCGAAGGCGCAGATGAAAGCTGGCCTGTTGATGGCGCT GGAGAGTTGCAGCGCCCGCGCCGAACAATTGGCCCGGCATATGCTCGTTTATGGACGGCCCCAGAGCGTCGGGGAATTGA CCGCCAGGATCGACGCCGTCAGCGTCGAATCAACGCGTGATGCGGCGCGCGGCCTCCTGGCCCGCAGCCGTCCCGCTGTC GTCGCGCTCGGCAGCGGAAGGGGGCTGGACAGCGCAGTCGCTTTCGCGGAAGGATTGGCGCAGTCGAAGGCCCGGATCCT GCTCCACTAG
Upstream 100 bases:
>100_bases TGACCCGGCCCGAGCGGATCACGATCGTGAACAACGATCAGGCAGAAATCGAACGGTTCGTGCTGTCCGTCAGCCGCGCC GCCAATCACGGAGTTACCGG
Downstream 100 bases:
>100_bases AGCTTTTTCCGGCGAAGCGGATATCGGTTCGCCGAAGGAAATGCGACGAGACATTCACTTCCTGAGCATGATCCGATTCA ACGTGGTCAGATTAAAATCT
Product: peptidase M16
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MSVNVTKLSSGLTVVTDDMPHLETAALGVWTGVGGRDEKPDEHGISHLLEHMAFKGTTTRSSRAIAEEIEAVGGDLNAAT GVETTAYYARVMKADVPLALDVLSDILSNPIFDAKELECEKGVIEQEIGAAQDTPDDVVFEQLNELCYPDQPIGRSLLGT PETLERFNSDMLHGYLKTHYRGPDMVVAAAGAIEHGMVVAEVERRFAGFDAAPPPQPAAATFGHGGSRVVHRDLEQAHLT LALEGVPQTDGSLFSLQVFTSVLGGGMSSRLFQEVREKRGLCYSIYTFHAPYADTGLFGLYTGTDPSDAPEMMEVIVDVI SEAVETLTEAEIARAKAQMKAGLLMALESCSARAEQLARHMLVYGRPQSVGELTARIDAVSVESTRDAARGLLARSRPAV VALGSGRGLDSAVAFAEGLAQSKARILLH
Sequences:
>Translated_429_residues MSVNVTKLSSGLTVVTDDMPHLETAALGVWTGVGGRDEKPDEHGISHLLEHMAFKGTTTRSSRAIAEEIEAVGGDLNAAT GVETTAYYARVMKADVPLALDVLSDILSNPIFDAKELECEKGVIEQEIGAAQDTPDDVVFEQLNELCYPDQPIGRSLLGT PETLERFNSDMLHGYLKTHYRGPDMVVAAAGAIEHGMVVAEVERRFAGFDAAPPPQPAAATFGHGGSRVVHRDLEQAHLT LALEGVPQTDGSLFSLQVFTSVLGGGMSSRLFQEVREKRGLCYSIYTFHAPYADTGLFGLYTGTDPSDAPEMMEVIVDVI SEAVETLTEAEIARAKAQMKAGLLMALESCSARAEQLARHMLVYGRPQSVGELTARIDAVSVESTRDAARGLLARSRPAV VALGSGRGLDSAVAFAEGLAQSKARILLH >Mature_428_residues SVNVTKLSSGLTVVTDDMPHLETAALGVWTGVGGRDEKPDEHGISHLLEHMAFKGTTTRSSRAIAEEIEAVGGDLNAATG VETTAYYARVMKADVPLALDVLSDILSNPIFDAKELECEKGVIEQEIGAAQDTPDDVVFEQLNELCYPDQPIGRSLLGTP ETLERFNSDMLHGYLKTHYRGPDMVVAAAGAIEHGMVVAEVERRFAGFDAAPPPQPAAATFGHGGSRVVHRDLEQAHLTL ALEGVPQTDGSLFSLQVFTSVLGGGMSSRLFQEVREKRGLCYSIYTFHAPYADTGLFGLYTGTDPSDAPEMMEVIVDVIS EAVETLTEAEIARAKAQMKAGLLMALESCSARAEQLARHMLVYGRPQSVGELTARIDAVSVESTRDAARGLLARSRPAVV ALGSGRGLDSAVAFAEGLAQSKARILLH
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=412, Percent_Identity=35.1941747572816, Blast_Score=241, Evalue=9e-64, Organism=Homo sapiens, GI46593007, Length=418, Percent_Identity=32.0574162679426, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI24308013, Length=453, Percent_Identity=25.60706401766, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI50592988, Length=398, Percent_Identity=24.1206030150754, Blast_Score=105, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71999683, Length=413, Percent_Identity=30.5084745762712, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI17553678, Length=421, Percent_Identity=28.978622327791, Blast_Score=167, Evalue=9e-42, Organism=Caenorhabditis elegans, GI17510601, Length=465, Percent_Identity=23.6559139784946, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17569737, Length=396, Percent_Identity=22.7272727272727, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323192, Length=435, Percent_Identity=31.4942528735632, Blast_Score=233, Evalue=4e-62, Organism=Saccharomyces cerevisiae, GI6321813, Length=434, Percent_Identity=27.8801843317972, Blast_Score=155, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6319426, Length=429, Percent_Identity=26.1072261072261, Blast_Score=114, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357875, Length=412, Percent_Identity=33.252427184466, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI24646943, Length=412, Percent_Identity=33.252427184466, Blast_Score=236, Evalue=3e-62, Organism=Drosophila melanogaster, GI19921772, Length=440, Percent_Identity=25.4545454545455, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI24665395, Length=412, Percent_Identity=23.5436893203883, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 45848; Mature: 45717
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVNVTKLSSGLTVVTDDMPHLETAALGVWTGVGGRDEKPDEHGISHLLEHMAFKGTTTR CCCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC SSRAIAEEIEAVGGDLNAATGVETTAYYARVMKADVPLALDVLSDILSNPIFDAKELECE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHH KGVIEQEIGAAQDTPDDVVFEQLNELCYPDQPIGRSLLGTPETLERFNSDMLHGYLKTHY HCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC RGPDMVVAAAGAIEHGMVVAEVERRFAGFDAAPPPQPAAATFGHGGSRVVHRDLEQAHLT CCCCEEEEECCHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEE LALEGVPQTDGSLFSLQVFTSVLGGGMSSRLFQEVREKRGLCYSIYTFHAPYADTGLFGL EEEECCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEE YTGTDPSDAPEMMEVIVDVISEAVETLTEAEIARAKAQMKAGLLMALESCSARAEQLARH ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLVYGRPQSVGELTARIDAVSVESTRDAARGLLARSRPAVVALGSGRGLDSAVAFAEGLA HHHCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH QSKARILLH HCCHHEECC >Mature Secondary Structure SVNVTKLSSGLTVVTDDMPHLETAALGVWTGVGGRDEKPDEHGISHLLEHMAFKGTTTR CCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC SSRAIAEEIEAVGGDLNAATGVETTAYYARVMKADVPLALDVLSDILSNPIFDAKELECE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHH KGVIEQEIGAAQDTPDDVVFEQLNELCYPDQPIGRSLLGTPETLERFNSDMLHGYLKTHY HCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC RGPDMVVAAAGAIEHGMVVAEVERRFAGFDAAPPPQPAAATFGHGGSRVVHRDLEQAHLT CCCCEEEEECCHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEE LALEGVPQTDGSLFSLQVFTSVLGGGMSSRLFQEVREKRGLCYSIYTFHAPYADTGLFGL EEEECCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEE YTGTDPSDAPEMMEVIVDVISEAVETLTEAEIARAKAQMKAGLLMALESCSARAEQLARH ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLVYGRPQSVGELTARIDAVSVESTRDAARGLLARSRPAVVALGSGRGLDSAVAFAEGLA HHHCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH QSKARILLH HCCHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA