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The map label for this gene is cbbR3 [H]

Identifier: 74318669

GI number: 74318669

Start: 2724791

End: 2725741

Strand: Direct

Name: cbbR3 [H]

Synonym: Tbd_2651

Alternate gene names: 74318669

Gene position: 2724791-2725741 (Clockwise)

Preceding gene: 74318657

Following gene: 74318674

Centisome position: 93.64

GC content: 64.88

Gene sequence:

>951_bases
ATGAACGTGACATTTCGCCAGCTGCGCCTGCTCGAAGCGGTGGCGCGGCACTCCAGCTTCACCCGCGCCTCCGAGGAGCT
GCACCTGACGCAGCCGGCGGTCTCCACCCAGATCAAGCAGCTCGAGGAGGAGATCGGCATGCCGCTGTTCGAGCAGATGG
GCAAGAAGATCTTCCTCACCGAGGCCGGCAAGGAGGTCTACGCCTTCAGCCGCAATTTGGCGCAGCAGTTCCGCGACATC
GAATCCGTGCTCGACGACATGAAAGGCGTCAAGCGCGGCACGCTGTCGCTCACCGTCACGAGCACCGGCAAGTATTTCGC
GCCCTACCTGCTCGCGGCCTTCCTCAAGCGCTATCCCGGCACCCAGGTTCATCTCGAGGTCACCAACCGCGAGGAGGTCG
TCCAGCAGCTGCACGACAACACCCCCGACATGGCGATCATGGGCACGCCGCCGGAGCACATCGAACTGCATTCGCAGGCC
TTCATGCAGAACCCGCTCGTCATCATCGCGCCGCCGGACCATCCGCTGGTCGGCGTGTCGCGCGTGCCGCTCAGCCGGCT
GGTCGAGGAAAACTTCATCCTGCGCGAGCGCGGCTCCGGCACGCGCAACGCGGTCGAGCGCTTCTTCGAGCAGCGCGGCA
TCAAGCTCAACACATCGATGGAAATGAGCCGCAACGAGGCGATCAAGCACGCGGTGATGGCCGGTCTGGGCCTCGGCATC
GTGTCGCTGCACACGCTCGAATTCGAGCTCGCGCTGAGCCGCATCGCGCTGCTCAGCGTCGAGAGCTTCCCGATCATGAA
GGAGTGGTACCTCGTCCATCGCAACGGCAAGCGCATGTCGCCGATCGCGCAGGCCTTCCACCAGTTCGTGCTCAACGAGG
CCGACCGCATCATGAAGCTGCCGCAGCCGAAGCCGGTGACACGCTCGCGCCGGCGCGTGACGCGCTCGTAA

Upstream 100 bases:

>100_bases
TGTTGTCACTATAAAGAGCTCGTTACATAATAAAAAATGAATAATATTTATTATTGCCATTCACTATCGTGAATGGATCG
ACATCAAGGAAAGGGCTTCC

Downstream 100 bases:

>100_bases
CGGGTTTCCAACGGCGGCGCAGGAACCTCTGAAAAACGTCGCGAGCACGCCCGGAGGCTGACGGGAGCGCAACTGTACGC
CGAGTACACGGAGCATCACA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLTEAGKEVYAFSRNLAQQFRDI
ESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPGTQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQA
FMQNPLVIIAPPDHPLVGVSRVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGI
VSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKLPQPKPVTRSRRRVTRS

Sequences:

>Translated_316_residues
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLTEAGKEVYAFSRNLAQQFRDI
ESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPGTQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQA
FMQNPLVIIAPPDHPLVGVSRVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGI
VSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKLPQPKPVTRSRRRVTRS
>Mature_316_residues
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLTEAGKEVYAFSRNLAQQFRDI
ESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPGTQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQA
FMQNPLVIIAPPDHPLVGVSRVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGI
VSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKLPQPKPVTRSRRRVTRS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=31.7241379310345, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI157672245, Length=224, Percent_Identity=32.5892857142857, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788748, Length=315, Percent_Identity=24.7619047619048, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787879, Length=301, Percent_Identity=26.9102990033223, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=25.5060728744939, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=26.7857142857143, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=25.3061224489796, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=24.2914979757085, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=26.2068965517241, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787806, Length=297, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=27.0161290322581, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=24.2914979757085, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=301, Percent_Identity=23.9202657807309, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=23.9669421487603, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367136, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=22.8956228956229, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787128, Length=132, Percent_Identity=34.0909090909091, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=30.1775147928994, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35968; Mature: 35968

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCHHHHHCCCEEEEE
EAGKEVYAFSRNLAQQFRDIESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
TQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQAFMQNPLVIIAPPDHPLVGVS
CEEEEEECCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
RVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGI
CCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH
VSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PQPKPVTRSRRRVTRS
CCCCCCCHHHHHCCCC
>Mature Secondary Structure
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCHHHHHCCCEEEEE
EAGKEVYAFSRNLAQQFRDIESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
TQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQAFMQNPLVIIAPPDHPLVGVS
CEEEEEECCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
RVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGI
CCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH
VSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PQPKPVTRSRRRVTRS
CCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]