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The map label for this gene is cbbR2 [H]

Identifier: 74318657

GI number: 74318657

Start: 2714438

End: 2715346

Strand: Direct

Name: cbbR2 [H]

Synonym: Tbd_2639

Alternate gene names: 74318657

Gene position: 2714438-2715346 (Clockwise)

Preceding gene: 74318653

Following gene: 74318669

Centisome position: 93.29

GC content: 66.78

Gene sequence:

>909_bases
ATGAGGCGGCTGACCTTACGCCAGTTCCGGATTTTCGAAGCGGTCGCGCGCCATCTGTCGTTCTCGCGCGCCGCGGAAGA
GCTGCATCTCTCGCAGCCCGCGGTGTCGATGCAGGTGCGCGGCATCGAGGTGATTCTCGGCATGCCGCTCACCGAGCAGA
TCGGGAGAAAGATTTTCCTGACCGACGCGGGCCGCGAGGTACTGCACGCGAGCCAGGCGATCACGGCGCGTCTCGACGAC
CTGCAGCACAACCTCGTCCAGCTGCGCGGCCTCGAACAGGGGCGGCTCACTCTGGCCGTCACGTCGACCGTGAACGCGGT
CGCGACCGGCATCCTCGCCCGCTTCCGCGCGCGCTATCCGGACATCGCGATTCACCTCGGCGTGTCGAATCGCGCCGAGG
TGCTCGACATGCTGGTCGGCAATCAGGTCGACCTCGCGATCATGGGGCAGGTGCCCGACCACCTCGGCCTCGACGCGACG
CGCTTCATGGACAATCCGCTGGTCGTGATCGCCCCACCCGACCATCCGCTGGCATCGCGGCGCAAGGTGCCGATCGAAAC
GCTCGCCGACGAACCCTTCCTCGTGCGCGAAGCCGGCTCGGGCACGCGCGGCGCGATGGAACGCTTCTTCGCCGCGCGCG
GCCTCGAACTGAAGAGCAGCATGGAAATGAGCAGCAACGAGGCGATCCGTCAGGCGGTTCAGGCCGGACTCGGGCTTGGC
ATCCTTTCGCTGCAGACGCTGGAACTCGAACTTGCGCTCAAGCGCCTCGCGGTGTTGAAGGCCGAAGGCTTCCCGATCAT
GCGCCACTGGTACGTAGTGCACCGCGCCGACAAGCGGCTGTCGCCGGTGGCGCAGGCGTTCAAGAAATTCGTGCTGGGGG
GACAAGGCGGACGTCGCCGGCCAGCCTAG

Upstream 100 bases:

>100_bases
GGGCTGGGGCTCCCCAAGACGGGGCGACTATACGCAGACGCTTATATAATGAATATTCAATTGTTCTGATAAAACCCATA
TCAATGGGCTTATATATCGA

Downstream 100 bases:

>100_bases
TACGGCACTCCAACAATGTCCGTACGCGCCTGCGTGCGCATCGGCACGCCTAGGGCGCGACCCGAACCGCAGTCATCGCG
CCGTCAGCACGAGAACGAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFLTDAGREVLHASQAITARLDD
LQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYPDIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDAT
RFMDNPLVVIAPPDHPLASRRKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLG
ILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRRPA

Sequences:

>Translated_302_residues
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFLTDAGREVLHASQAITARLDD
LQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYPDIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDAT
RFMDNPLVVIAPPDHPLASRRKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLG
ILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRRPA
>Mature_302_residues
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFLTDAGREVLHASQAITARLDD
LQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYPDIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDAT
RFMDNPLVVIAPPDHPLASRRKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLG
ILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRRPA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=29.0657439446367, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=34.9557522123894, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=29.4314381270903, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=28.0487804878049, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=27.0833333333333, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=25.6944444444444, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=30.0411522633745, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=26.7796610169492, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789204, Length=244, Percent_Identity=24.5901639344262, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=26.4406779661017, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=244, Percent_Identity=25.8196721311475, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=25.5144032921811, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=296, Percent_Identity=27.3648648648649, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=24.3986254295533, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=180, Percent_Identity=31.1111111111111, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33320; Mature: 33320

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCHHHHCCEEEE
TDAGREVLHASQAITARLDDLQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC
DIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDATRFMDNPLVVIAPPDHPLASR
CEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCHHCCCHHHHCCCCEEEEECCCCCCCCC
RKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLG
CCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCH
ILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEHHCCCHHHHHHHHHHHHHHCCCCCCCC
PA
CC
>Mature Secondary Structure
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCHHHHCCEEEE
TDAGREVLHASQAITARLDDLQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCC
DIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDATRFMDNPLVVIAPPDHPLASR
CEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCHHCCCHHHHCCCCEEEEECCCCCCCCC
RKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLG
CCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCH
ILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEHHCCCHHHHHHHHHHHHHHCCCCCCCC
PA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]