Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74318653

Identifier: 74318653

GI number: 74318653

Start: 2708475

End: 2709416

Strand: Direct

Name: 74318653

Synonym: Tbd_2635

Alternate gene names: NA

Gene position: 2708475-2709416 (Clockwise)

Preceding gene: 74318648

Following gene: 74318657

Centisome position: 93.08

GC content: 67.94

Gene sequence:

>942_bases
GTGCTTGCCGGCTTTTTCCGATTTCTCGGTCAAGGCCTTCTGCACCAATGCCGCAAAGGCGACGAGGTCTTGCCGGGGGT
ACGCGTCCTGCACGCCGGCGTCCTGAAAGAACTCGGCGACCCAGCGGGCGTCGAGCTGGTCGCTCGCCGTCTCCTGCAGG
TATTCTCGCGCGGCGGTTTCGACGTACTCGCTCAGTTTCATCGCGGCTTCCTTTTCTCGACGAAGCGGCCGGCCCCCTTG
GGGAGGGTCCGTCCCCACCCTGATAGTGACCCGCCGGCCGGCTTGCCGTTCCACCCTTCGAACAGCGTATCCGGCCTGCG
AGCTGGCGGCAGACGCATCGCGCGCTGTCTTATCATTCCGTCAGGGCCGCTCCAGCTGTCGGGCCAGCGTGGCCGGTGCG
CGAGACGCACGTCGCGGCACGGTGCCGGTCGTTCCCGGCCGGTTTTTCAGTCCGATCAATTCCGGAGTTCAAAAATCAGC
GACACGAACCCGCCTCTGCCCGCCGCGCCAAAGCCGCGGACGCTTTCGGCCGGTGTCGTCGCCGTGCGCCGCGAGGCCGG
CGGCTGGCGTCTGCTCGTGCTGCGTGCCTACCGCAACTGGGACTTCCCGAAGGGTGTCGTCGAAGCGGGCGAGCCGCCGC
ACGACGCGGCGATACGGGAGACCGCCGAGGAAACGGGGATCGACGATCTCGTCTTCGCCTGGGGCGACGACTTTCGCGAG
ACCGCACCGTACGGCCAGGGCAAGATCGCCCGCTACTACCTCGCCGAAACGCAGCAGACGCAGATCACGCTTCCGGTTTC
CCCCGAGCTCGGTCGGCCCGAGCACGACGAGTGGCGCTGGGTCGATTTCGACACGGCGCAGGATCTACTGCCGCCGCGGC
TGGCGCCGATCCTGACATGGGCACGCGAGCGGCTCGCAGCCGAGGACGGCATCGCGCGCTGA

Upstream 100 bases:

>100_bases
ATGCCTGCTCGCACGGCGTGAAGCGGCCTCAGGGCGATCGACCTCACGATTTGCGGGGCGACCGAGGCAAGGCCACGATG
CGCGCGAGCTGGAAGCGCGT

Downstream 100 bases:

>100_bases
GAGCGGACCGGCTGCTCCCGAGAGCCGGGCCTGTTTCGGTCCGGGCCCCCGGTCGACGCTGTCGATCGCTATTTGGTCAA
CGCCATGAAAAGCTCGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NUDIX Family Hydrolase

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGFDVLAQFHRGFLFSTKRPAPL
GRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIPSGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKIS
DTNPPLPAAPKPRTLSAGVVAVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRE
TAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTWARERLAAEDGIAR

Sequences:

>Translated_313_residues
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGFDVLAQFHRGFLFSTKRPAPL
GRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIPSGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKIS
DTNPPLPAAPKPRTLSAGVVAVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRE
TAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTWARERLAAEDGIAR
>Mature_313_residues
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGFDVLAQFHRGFLFSTKRPAPL
GRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIPSGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKIS
DTNPPLPAAPKPRTLSAGVVAVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRE
TAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTWARERLAAEDGIAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34559; Mature: 34559

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGF
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
DVLAQFHRGFLFSTKRPAPLGRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIP
HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEC
SGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKISDTNPPLPAAPKPRTLSAGVV
CCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
AVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRE
EEEECCCCEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHH
TAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTW
HCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHHH
ARERLAAEDGIAR
HHHHHHHHCCCCC
>Mature Secondary Structure
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGF
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
DVLAQFHRGFLFSTKRPAPLGRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIP
HHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEC
SGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKISDTNPPLPAAPKPRTLSAGVV
CCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
AVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRE
EEEECCCCEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHH
TAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTW
HCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHHH
ARERLAAEDGIAR
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA