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The map label for this gene is rimN

Identifier: 74318478

GI number: 74318478

Start: 2531387

End: 2531953

Strand: Direct

Name: rimN

Synonym: Tbd_2460

Alternate gene names: 74318478

Gene position: 2531387-2531953 (Clockwise)

Preceding gene: 74318477

Following gene: 74318479

Centisome position: 86.99

GC content: 72.84

Gene sequence:

>567_bases
GTGAGCACCGCGGAAAGCCGGGAAGGGGCGCAGCCGGGTCTGCACGCCTACCTCAGGCGCGGCGGCGTGATCGCGTATCC
GACCGAATCGTGCTACGGCCTCGGCTGCGATCCGCGCAACGCCGCGGCGCTGCGCCGGCTCATTCGCCTCAAGGGCCGCG
ACGCCGGCAAGGGCATGCTGCTGATCGCGGACCGCTACCGGCGCCTGCAGCCTTTCGTCGGCGCACTGAGCCCGACGGGC
CGCGCGCGCATGCGCCGCAGCTGGCCGGGCCCGGTGACCTGGGTCGTCCCGGCGTCGCGCCGCTGTCCGCCCGAACTGAC
CGGCGGGCGTACGACCGTCGCGGTCCGCGTGACCGCTCACCGGCCCGCCGCAGCGCTCTGCCGCAGCCTCGGCACCGCGC
TGGTCTCGACGAGCGCCAACAAAAGCGGCCACACGCCTGCCAAAACTGCGGCGCAATGTCGCAGAATGTTCGGCGCGCGC
GTGCGCGTCGTCGACGGACGCATCGGCACACGCCGCCGCCCGTCGACGCTCATCGACCTTGCCACCGGAAAAATCCTTCG
AGCCTGA

Upstream 100 bases:

>100_bases
GCCTACGACGCGGTCGCCGCGATCCACTTCGACGGCATGCAATTCCGTCGCGACATCGGCTGGCGCGCGCTCGACCGCAG
CAAGAAGTGAGTCCCCGGGC

Downstream 100 bases:

>100_bases
TGTCTGTCACCGCCTGCGATCCCTCCGCCGTCAAAACCTGGCTGCTCGACCTGCAGTCGCGCATCGTCGCCGCGCTCGAA
GCCGCCGACGGCCTGCCCTT

Product: translation factor SUA5

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSTAESREGAQPGLHAYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGALSPTG
RARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTALVSTSANKSGHTPAKTAAQCRRMFGAR
VRVVDGRIGTRRRPSTLIDLATGKILRA

Sequences:

>Translated_188_residues
MSTAESREGAQPGLHAYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGALSPTG
RARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTALVSTSANKSGHTPAKTAAQCRRMFGAR
VRVVDGRIGTRRRPSTLIDLATGKILRA
>Mature_187_residues
STAESREGAQPGLHAYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGALSPTGR
ARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTALVSTSANKSGHTPAKTAAQCRRMFGARV
RVVDGRIGTRRRPSTLIDLATGKILRA

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=172, Percent_Identity=45.3488372093023, Blast_Score=144, Evalue=2e-36,
Organism=Escherichia coli, GI87081864, Length=168, Percent_Identity=27.9761904761905, Blast_Score=67, Evalue=9e-13,
Organism=Drosophila melanogaster, GI78707274, Length=168, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_THIDA (Q3SG43)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_316218.1
- ProteinModelPortal:   Q3SG43
- SMR:   Q3SG43
- STRING:   Q3SG43
- GeneID:   3671779
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2460
- NMPDR:   fig|292415.3.peg.2533
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   IAIRVTA
- PhylomeDB:   Q3SG43
- ProtClustDB:   CLSK459517
- BioCyc:   TDEN292415:TBD_2460-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20268; Mature: 20137

Theoretical pI: Translated: 12.27; Mature: 12.27

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAESREGAQPGLHAYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGML
CCCCCCCCCCCCHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCEE
LIADRYRRLQPFVGALSPTGRARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAH
EEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECC
RPAAALCRSLGTALVSTSANKSGHTPAKTAAQCRRMFGARVRVVDGRIGTRRRPSTLIDL
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEC
ATGKILRA
CCCHHCCC
>Mature Secondary Structure 
STAESREGAQPGLHAYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGML
CCCCCCCCCCCHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCEE
LIADRYRRLQPFVGALSPTGRARMRRSWPGPVTWVVPASRRCPPELTGGRTTVAVRVTAH
EEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECC
RPAAALCRSLGTALVSTSANKSGHTPAKTAAQCRRMFGARVRVVDGRIGTRRRPSTLIDL
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEC
ATGKILRA
CCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA