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The map label for this gene is rimM

Identifier: 74318392

GI number: 74318392

Start: 2449603

End: 2450172

Strand: Direct

Name: rimM

Synonym: Tbd_2374

Alternate gene names: 74318392

Gene position: 2449603-2450172 (Clockwise)

Preceding gene: 74318391

Following gene: 74318393

Centisome position: 84.18

GC content: 64.39

Gene sequence:

>570_bases
ATGGCGCCCAGCTGTCCGACACGGTCGCGCGTCTGGTCAAGCAGAACAAGCCCGCCGCCTGATTTGGCTGAGTCCGAAGC
CTGGGTCGTGATGGGGCGGGTCAGCGCCCCCTTCGGCGTCAAAGGCTGGGTCAAGGTCCAGCCCTTCAGCGAAGACCCGG
GGACGCTGATGGATTTCGAGTCCTGGCGCGTCGGACGAGGCGAGCAGCAGGCGCAATACGCCGTCGAGGCCGTGCAGGAT
CACGGCAAGTCGCTGGTCGCCAAACTAGTCGGCATCGACGACCGCGACGCGGCCTTTGCTTTGCGAGGTCAGGAAGTCTC
GGTGGCGAAAAGCGCGTTACCGCCGCCGGAAGAGAACGAGTTTTATTGGTCGGACCTGATCGGCCTGACCGTGATGAACC
GCGAAGGCGTCGAACTCGGCAAGGTCGACAGCCTCATGGAAAGCGGCGCCCACGATCTGCTGGTCGTCAAAGGCAGGCGC
GAACATCTCATTCCGTTCGTCGCGGCCTTCGTCGGCAAGGTCGACCTGGCCGGCGGGACCGTCGAGGTCGACTGGGGCGA
GGACTACTAA

Upstream 100 bases:

>100_bases
GGCCGCTTCATTGAGCGCGTCGGCTTCTACAACCCCGTCGCCGCCGAGGGCGCCGAAGGCGTACGCCTGAATGCGGAACG
CATCGGCTACTGGGTAAGCA

Downstream 100 bases:

>100_bases
TGCGCTTCGACGCGGTCACGCTCTTCGCCGAGATGTTCGATGCGGTACTGGACTACGGCATCACGCGACGCGCGCTGGAT
CGCGGGCTTTACCGATTCAA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MAPSCPTRSRVWSSRTSPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQD
HGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREGVELGKVDSLMESGAHDLLVVKGRR
EHLIPFVAAFVGKVDLAGGTVEVDWGEDY

Sequences:

>Translated_189_residues
MAPSCPTRSRVWSSRTSPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQD
HGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREGVELGKVDSLMESGAHDLLVVKGRR
EHLIPFVAAFVGKVDLAGGTVEVDWGEDY
>Mature_188_residues
APSCPTRSRVWSSRTSPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQDH
GKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREGVELGKVDSLMESGAHDLLVVKGRRE
HLIPFVAAFVGKVDLAGGTVEVDWGEDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=165, Percent_Identity=38.1818181818182, Blast_Score=133, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_THIDA (Q3SGC3)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_316132.1
- ProteinModelPortal:   Q3SGC3
- SMR:   Q3SGC3
- STRING:   Q3SGC3
- GeneID:   3671867
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2374
- NMPDR:   fig|292415.3.peg.2447
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q3SGC3
- BioCyc:   TDEN292415:TBD_2374-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20643; Mature: 20512

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSCPTRSRVWSSRTSPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFE
CCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCC
SWRVGRGEQQAQYAVEAVQDHGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
FYWSDLIGLTVMNREGVELGKVDSLMESGAHDLLVVKGRREHLIPFVAAFVGKVDLAGGT
EEEHHHEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCEECCCCE
VEVDWGEDY
EEECCCCCC
>Mature Secondary Structure 
APSCPTRSRVWSSRTSPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFE
CCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEECCC
SWRVGRGEQQAQYAVEAVQDHGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
FYWSDLIGLTVMNREGVELGKVDSLMESGAHDLLVVKGRREHLIPFVAAFVGKVDLAGGT
EEEHHHEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCEECCCCE
VEVDWGEDY
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA