| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yheS [H]
Identifier: 74318369
GI number: 74318369
Start: 2424910
End: 2426862
Strand: Reverse
Name: yheS [H]
Synonym: Tbd_2351
Alternate gene names: 74318369
Gene position: 2426862-2424910 (Counterclockwise)
Preceding gene: 74318371
Following gene: 74318368
Centisome position: 83.4
GC content: 67.38
Gene sequence:
>1953_bases ATGATCCTCCTGAAGAATCTGAGCCTGCGGCGCGGCGCGAAAGTGCTGCTCGACGACGCCTCGGTCGCGATCAATCCCGG CGAGAAAGTCGGACTCGTCGGCCGCAACGGCGCCGGAAAATCGAGCCTGTTCGCGCTCCTGAACGGCTCGCTGCATGAAG ATAAGGGCGACTTCTCGGTCCCGTCGCAATGGCGGCTCGCGCAGGTCGCGCAGGACATGCCCGAGACCGATGCGCCGGCG ACCGACTTCGTTATCGCCGGCGACACGCGGCTCGTCGCCGCCCAGGCCGAAGTGGAAGCGGCCGAAGCGAGCGACGACGG CGAACGCATGGCGCACGCCTACATGGCGCTGCACGACGCGGGCGCCCACGACGCCGAATCGCGGGCGCAGGCCTTGATTC TCGGCCTCGGGTTCCAGGTTCGCGAGCTGAGCCAACCGGTCAACAGCTTCTCCGGCGGATGGCGCATGCGTCTGCAGCTC GCGCGTGCGCTGATGTGCCCGTCCGATCTGCTGCTGCTCGACGAACCGACCAACCACCTCGACCTCGATGCCCTGGTGTG GCTCGAGGCCTGGCTGAAGAAATACGCCGGCACGCTGCTGGTGATCAGCCACGACCGCGATTTCCTCGACGCCGTCACCG ACGTCACGCTCCACATCGAGAACGGCCGGCTGACCCGCTACGGCGGCAACTACAGCACCTTCGAGGACATGCGCGTCGAG CAGATGGCCTTGCAGCAGGCAGCCTACGCCCGTCAGCAGGAAAAGATCGCCCATCTCAAGAAGTTCATTGATCGCTTCAA GGCCAAGGCGAGCAAGGCCAAGCAGGCGCAAAGCCGGGTCAAGGCGCTCGACCGCATGGAGCGCCTCGCGCCGCTCCTCG CCGACGCCGAGTTCTCGTTCGAATTCCAGGAACCCGAGAGCCTGCCGAACCCGATGCTCACGATCGACGACGCGAGCTTC GGCTACCCCCCGCCCGACGGGGCGCCGGCCGGCACGCCGCCGACCGTGATCGTCCAGCACGTCAGCAGGTCGGTATTCGC CGGCCAGCGCATCGGCATCCTCGGTGCCAACGGCCAGGGCAAGTCGACGCTCGTGAAGACGATCGCGCGCACGCTGCCCG TCGTCGCCGGCAGCGTGATTGAAGGCAAGGGCCTCAACATCGGCTATTTCGCGCAGCAGGAGCTCGACGTGCTGCGTCCG GCCGACACGCCGCTCGAGCACATGATCCGGCTCGCGCGCGACGTCATCGCCAACGGCGGCGCCGGCCGCTTCAGCAGCCG CGAACAGGACCTGCGCAATTTCCTCGGCACCTTCAATTTCAGCGGCGACATGGTCAAGCAGGCGGTCGGCAGCATGAGCG GCGGCGAGAAGGCGCGCCTCGTGCTGTGCATGATCGTGTGGCAGCGGCCGAATCTGCTGCTGCTCGACGAGCCGACCAAC CACCTCGACCTCGCGACGCGCGAGGCGCTCGCGATGGCCTTGAACGAGTTCGAGGGGACGCTGATGCTGGTCAGTCACGA CCGCGCCCTGCTGCGTTCGGTGTGCGACGAGTTCTGGCTTGTCACGCGCGGCGGCGTCGTGCCCTTCGACGGCGATCTCG ACGACTACCAGCGCTACCTGCTCGACGAGGCGAAACGCCTGCGCGAAAGCCTGAAGGCGGCGGACAAGGCGGTGGAAACG CCCGCGCCGAAGGCGCCGCTGGCGCCCGCGAAGCGTGCGCCCTCGGGCAAGCTCAAGCCGCTCAAGCAGTCGCTCGAGAA GAGCGAGCAACGCCTCGCGGCGTTGCAGGCCGAAAAGGCCACGCTCGAGGCGCGTCTCGACGGCGCCGTCGCGCGCGACG AAATCGCCGCGGCTGGCACCCGGCTTCAACAGCTCGCCGACGAACTCGAGCGCGAAGAAGAAAGGTGGCTGCAGATATCG GGAGAGATCGAGACGCACGAGGCGAGCGCCTGA
Upstream 100 bases:
>100_bases TTCAACAGCTCACGGCCAGGCGCCTGCCGGGCACCCGTGCACGACACGGTAGAATTCGGCTTTTCCTTGGGGCGACGGGC TGCGGCGCGTCGCATCGTGC
Downstream 100 bases:
>100_bases GCCGCCGCGGTCGCTTGGATTCCGCGCGCCGCCCGCCTATGCTGCACAGGCCAAAGGCGCAGCGAATTGCCGAGGGATTT CAATGCCGACATCCGAGCAG
Product: ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 650; Mature: 650
Protein sequence:
>650_residues MILLKNLSLRRGAKVLLDDASVAINPGEKVGLVGRNGAGKSSLFALLNGSLHEDKGDFSVPSQWRLAQVAQDMPETDAPA TDFVIAGDTRLVAAQAEVEAAEASDDGERMAHAYMALHDAGAHDAESRAQALILGLGFQVRELSQPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKKYAGTLLVISHDRDFLDAVTDVTLHIENGRLTRYGGNYSTFEDMRVE QMALQQAAYARQQEKIAHLKKFIDRFKAKASKAKQAQSRVKALDRMERLAPLLADAEFSFEFQEPESLPNPMLTIDDASF GYPPPDGAPAGTPPTVIVQHVSRSVFAGQRIGILGANGQGKSTLVKTIARTLPVVAGSVIEGKGLNIGYFAQQELDVLRP ADTPLEHMIRLARDVIANGGAGRFSSREQDLRNFLGTFNFSGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALAMALNEFEGTLMLVSHDRALLRSVCDEFWLVTRGGVVPFDGDLDDYQRYLLDEAKRLRESLKAADKAVET PAPKAPLAPAKRAPSGKLKPLKQSLEKSEQRLAALQAEKATLEARLDGAVARDEIAAAGTRLQQLADELEREEERWLQIS GEIETHEASA
Sequences:
>Translated_650_residues MILLKNLSLRRGAKVLLDDASVAINPGEKVGLVGRNGAGKSSLFALLNGSLHEDKGDFSVPSQWRLAQVAQDMPETDAPA TDFVIAGDTRLVAAQAEVEAAEASDDGERMAHAYMALHDAGAHDAESRAQALILGLGFQVRELSQPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKKYAGTLLVISHDRDFLDAVTDVTLHIENGRLTRYGGNYSTFEDMRVE QMALQQAAYARQQEKIAHLKKFIDRFKAKASKAKQAQSRVKALDRMERLAPLLADAEFSFEFQEPESLPNPMLTIDDASF GYPPPDGAPAGTPPTVIVQHVSRSVFAGQRIGILGANGQGKSTLVKTIARTLPVVAGSVIEGKGLNIGYFAQQELDVLRP ADTPLEHMIRLARDVIANGGAGRFSSREQDLRNFLGTFNFSGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALAMALNEFEGTLMLVSHDRALLRSVCDEFWLVTRGGVVPFDGDLDDYQRYLLDEAKRLRESLKAADKAVET PAPKAPLAPAKRAPSGKLKPLKQSLEKSEQRLAALQAEKATLEARLDGAVARDEIAAAGTRLQQLADELEREEERWLQIS GEIETHEASA >Mature_650_residues MILLKNLSLRRGAKVLLDDASVAINPGEKVGLVGRNGAGKSSLFALLNGSLHEDKGDFSVPSQWRLAQVAQDMPETDAPA TDFVIAGDTRLVAAQAEVEAAEASDDGERMAHAYMALHDAGAHDAESRAQALILGLGFQVRELSQPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKKYAGTLLVISHDRDFLDAVTDVTLHIENGRLTRYGGNYSTFEDMRVE QMALQQAAYARQQEKIAHLKKFIDRFKAKASKAKQAQSRVKALDRMERLAPLLADAEFSFEFQEPESLPNPMLTIDDASF GYPPPDGAPAGTPPTVIVQHVSRSVFAGQRIGILGANGQGKSTLVKTIARTLPVVAGSVIEGKGLNIGYFAQQELDVLRP ADTPLEHMIRLARDVIANGGAGRFSSREQDLRNFLGTFNFSGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALAMALNEFEGTLMLVSHDRALLRSVCDEFWLVTRGGVVPFDGDLDDYQRYLLDEAKRLRESLKAADKAVET PAPKAPLAPAKRAPSGKLKPLKQSLEKSEQRLAALQAEKATLEARLDGAVARDEIAAAGTRLQQLADELEREEERWLQIS GEIETHEASA
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=556, Percent_Identity=36.8705035971223, Blast_Score=350, Evalue=2e-96, Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=34.4383057090239, Blast_Score=317, Evalue=2e-86, Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=34.4383057090239, Blast_Score=317, Evalue=3e-86, Organism=Homo sapiens, GI10947135, Length=557, Percent_Identity=33.9317773788151, Blast_Score=262, Evalue=8e-70, Organism=Homo sapiens, GI69354671, Length=557, Percent_Identity=33.9317773788151, Blast_Score=262, Evalue=1e-69, Organism=Homo sapiens, GI255708477, Length=314, Percent_Identity=22.9299363057325, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1789751, Length=649, Percent_Identity=46.6872110939908, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=32.6007326007326, Blast_Score=292, Evalue=6e-80, Organism=Escherichia coli, GI1787182, Length=529, Percent_Identity=31.1909262759924, Blast_Score=218, Evalue=1e-57, Organism=Escherichia coli, GI2367384, Length=539, Percent_Identity=30.2411873840445, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1788506, Length=256, Percent_Identity=27.34375, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1786345, Length=210, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=25.2212389380531, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI145693107, Length=581, Percent_Identity=21.1703958691911, Blast_Score=66, Evalue=9e-12, Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=28.2722513089005, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=24.6753246753247, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=24.7863247863248, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=26.5116279069767, Blast_Score=63, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17553372, Length=549, Percent_Identity=35.8834244080146, Blast_Score=333, Evalue=1e-91, Organism=Caenorhabditis elegans, GI17559834, Length=570, Percent_Identity=33.1578947368421, Blast_Score=304, Evalue=8e-83, Organism=Caenorhabditis elegans, GI17555318, Length=562, Percent_Identity=32.9181494661922, Blast_Score=291, Evalue=7e-79, Organism=Saccharomyces cerevisiae, GI6321121, Length=556, Percent_Identity=33.6330935251799, Blast_Score=318, Evalue=1e-87, Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=33.9449541284404, Blast_Score=310, Evalue=6e-85, Organism=Saccharomyces cerevisiae, GI6325030, Length=402, Percent_Identity=29.8507462686567, Blast_Score=152, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6324314, Length=396, Percent_Identity=27.2727272727273, Blast_Score=137, Evalue=4e-33, Organism=Saccharomyces cerevisiae, GI6323278, Length=396, Percent_Identity=26.7676767676768, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24666836, Length=551, Percent_Identity=38.8384754990926, Blast_Score=384, Evalue=1e-106, Organism=Drosophila melanogaster, GI24642252, Length=546, Percent_Identity=34.981684981685, Blast_Score=319, Evalue=3e-87, Organism=Drosophila melanogaster, GI18859989, Length=546, Percent_Identity=34.981684981685, Blast_Score=319, Evalue=3e-87, Organism=Drosophila melanogaster, GI24641342, Length=558, Percent_Identity=31.3620071684588, Blast_Score=279, Evalue=4e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 71104; Mature: 71104
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILLKNLSLRRGAKVLLDDASVAINPGEKVGLVGRNGAGKSSLFALLNGSLHEDKGDFSV CEEEECCCCCCCCEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC PSQWRLAQVAQDMPETDAPATDFVIAGDTRLVAAQAEVEAAEASDDGERMAHAYMALHDA CCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHCC GAHDAESRAQALILGLGFQVRELSQPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCCHHHHHHEEHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLKKYAGTLLVISHDRDFLDAVTDVTLHIENGRLTRYGGNYSTFEDMRVE CHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCCCHHHHHHH QMALQQAAYARQQEKIAHLKKFIDRFKAKASKAKQAQSRVKALDRMERLAPLLADAEFSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE EFQEPESLPNPMLTIDDASFGYPPPDGAPAGTPPTVIVQHVSRSVFAGQRIGILGANGQG EECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC KSTLVKTIARTLPVVAGSVIEGKGLNIGYFAQQELDVLRPADTPLEHMIRLARDVIANGG HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCC AGRFSSREQDLRNFLGTFNFSGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEECCCC HLDLATREALAMALNEFEGTLMLVSHDRALLRSVCDEFWLVTRGGVVPFDGDLDDYQRYL CHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEHHCCCCCCCCCCHHHHHHHH LDEAKRLRESLKAADKAVETPAPKAPLAPAKRAPSGKLKPLKQSLEKSEQRLAALQAEKA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TLEARLDGAVARDEIAAAGTRLQQLADELEREEERWLQISGEIETHEASA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC >Mature Secondary Structure MILLKNLSLRRGAKVLLDDASVAINPGEKVGLVGRNGAGKSSLFALLNGSLHEDKGDFSV CEEEECCCCCCCCEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC PSQWRLAQVAQDMPETDAPATDFVIAGDTRLVAAQAEVEAAEASDDGERMAHAYMALHDA CCHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHCC GAHDAESRAQALILGLGFQVRELSQPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCCHHHHHHEEHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLKKYAGTLLVISHDRDFLDAVTDVTLHIENGRLTRYGGNYSTFEDMRVE CHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCCCHHHHHHH QMALQQAAYARQQEKIAHLKKFIDRFKAKASKAKQAQSRVKALDRMERLAPLLADAEFSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE EFQEPESLPNPMLTIDDASFGYPPPDGAPAGTPPTVIVQHVSRSVFAGQRIGILGANGQG EECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC KSTLVKTIARTLPVVAGSVIEGKGLNIGYFAQQELDVLRPADTPLEHMIRLARDVIANGG HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCC AGRFSSREQDLRNFLGTFNFSGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEECCCC HLDLATREALAMALNEFEGTLMLVSHDRALLRSVCDEFWLVTRGGVVPFDGDLDDYQRYL CHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEHHCCCCCCCCCCHHHHHHHH LDEAKRLRESLKAADKAVETPAPKAPLAPAKRAPSGKLKPLKQSLEKSEQRLAALQAEKA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TLEARLDGAVARDEIAAAGTRLQQLADELEREEERWLQISGEIETHEASA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]