| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is gmhB [H]
Identifier: 74318364
GI number: 74318364
Start: 2419510
End: 2420052
Strand: Reverse
Name: gmhB [H]
Synonym: Tbd_2346
Alternate gene names: 74318364
Gene position: 2420052-2419510 (Counterclockwise)
Preceding gene: 74318365
Following gene: 74318363
Centisome position: 83.17
GC content: 66.3
Gene sequence:
>543_bases ATGAAACTCATCATTCTCGACCGCGACGGCGTCATCAACTTCGATTCCGACCACTTCATCAAGTCGCCGGACGAATGGAA GCCGATTCCCGGCAGCCTCGAAGCGATCGGACGGCTGACGCGAGAAGGTTGGCGCGTCGTCGTCGCGACCAACCAGTCGG GACTTGCGCGCGGCCTGTTCGAGATGGCCACCCTGAACGCCATCCACGCCAAGATGCACCGTGCGGTCGCCCAGGCAGGC GGGCGCATCGAGGCGGTTTTCTATTGCCCGCACGCCGCCGACATGAACTGCGGCTGTCGCAAGCCCAAACCCGGCCTCTT TACCGAAATCGCGGCGCGCTACAGCCGCGACCTGAATGACGTGCCTGCAGTCGGCGATTCGCTGCGCGACCTGCTGGCGG CCGCGACGGTCGGCGCGCGCCCGCTGCTGGTGCGCACCGGCAAAGGCGAACGCACGCTCGCGGCCGGCGGCATGCCGGAC AACACGCCGGTTTATTCCGACCTCAGCGAGGCCGTCGACCACCTGCTCAAGGCCGTCGCATGA
Upstream 100 bases:
>100_bases CCCGGCGCTCAGGGCCAACCGGCTCGCGCTGCTGAATCAGCTGCACCGGACGATGAACCGCGTGGCTGACATCTCCCGGC TCGCCGCCTAAACTTCCGCT
Downstream 100 bases:
>100_bases GCCTCGTCCGCTCGCTGGTCTTCGCGGTCCTGCAGACCGCGCTGACAATCCTTTTCAGTCTGGTCGCCTTGCTGTCCTTC CCGTTTTCGGCGCACGCGCG
Product: D,D-heptose 1,7-bisphosphate phosphatase
Products: NA
Alternate protein names: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [H]
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MKLIILDRDGVINFDSDHFIKSPDEWKPIPGSLEAIGRLTREGWRVVVATNQSGLARGLFEMATLNAIHAKMHRAVAQAG GRIEAVFYCPHAADMNCGCRKPKPGLFTEIAARYSRDLNDVPAVGDSLRDLLAAATVGARPLLVRTGKGERTLAAGGMPD NTPVYSDLSEAVDHLLKAVA
Sequences:
>Translated_180_residues MKLIILDRDGVINFDSDHFIKSPDEWKPIPGSLEAIGRLTREGWRVVVATNQSGLARGLFEMATLNAIHAKMHRAVAQAG GRIEAVFYCPHAADMNCGCRKPKPGLFTEIAARYSRDLNDVPAVGDSLRDLLAAATVGARPLLVRTGKGERTLAAGGMPD NTPVYSDLSEAVDHLLKAVA >Mature_180_residues MKLIILDRDGVINFDSDHFIKSPDEWKPIPGSLEAIGRLTREGWRVVVATNQSGLARGLFEMATLNAIHAKMHRAVAQAG GRIEAVFYCPHAADMNCGCRKPKPGLFTEIAARYSRDLNDVPAVGDSLRDLLAAATVGARPLLVRTGKGERTLAAGGMPD NTPVYSDLSEAVDHLLKAVA
Specific function: Converts the D-glycero-beta-D-manno-heptose 1,7- bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1- phosphate by removing the phosphate group at the C-7 position [H]
COG id: COG0241
COG function: function code E; Histidinol phosphatase and related phosphatases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gmhB family [H]
Homologues:
Organism=Escherichia coli, GI1786399, Length=154, Percent_Identity=37.012987012987, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI87082027, Length=143, Percent_Identity=30.0699300699301, Blast_Score=72, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR006543 - InterPro: IPR013954 [H]
Pfam domain/function: PF08645 PNK3P [H]
EC number: NA
Molecular weight: Translated: 19389; Mature: 19389
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLIILDRDGVINFDSDHFIKSPDEWKPIPGSLEAIGRLTREGWRVVVATNQSGLARGLF CEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHH EMATLNAIHAKMHRAVAQAGGRIEAVFYCPHAADMNCGCRKPKPGLFTEIAARYSRDLND HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC VPAVGDSLRDLLAAATVGARPLLVRTGKGERTLAAGGMPDNTPVYSDLSEAVDHLLKAVA CCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKLIILDRDGVINFDSDHFIKSPDEWKPIPGSLEAIGRLTREGWRVVVATNQSGLARGLF CEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHH EMATLNAIHAKMHRAVAQAGGRIEAVFYCPHAADMNCGCRKPKPGLFTEIAARYSRDLND HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC VPAVGDSLRDLLAAATVGARPLLVRTGKGERTLAAGGMPDNTPVYSDLSEAVDHLLKAVA CCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 12101286 [H]