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The map label for this gene is phnF [H]

Identifier: 74318319

GI number: 74318319

Start: 2373713

End: 2374441

Strand: Reverse

Name: phnF [H]

Synonym: Tbd_2301

Alternate gene names: 74318319

Gene position: 2374441-2373713 (Counterclockwise)

Preceding gene: 74318323

Following gene: 74318318

Centisome position: 81.6

GC content: 64.06

Gene sequence:

>729_bases
ATGAGTCTTGTGGCTTTGCAACGGAATGGCGGCGAAGCGATCTATAGCCAGATCGCGAAATTGCTCAAGGGGGAGATCGC
TTCGTTCCTGTCGCCGGGCGCCTGCCTGCCTTCGGAAAATGAGTTGGCGGAGCGTTTTGGCGTCAATCGGCACACGATAC
GACGCGCAGTAGAGGACTTGATCGCCGCCGGGTTACTGGAGCGCCGCCACGGCAAGGGCACTTTCGTACTCGATGCCCCC
GCCGACTATGTGCTGGGCAGCGGCACGCGCTTCACGGAAACCTTCGAATCCCTCGGCAAGACTGCCAGCAGCCGCGTCTT
GCGCAAGTTGGTCATCCCGGCGAGAGGTGGCGTTGCCACCCGCCTGCGCCTGGCTGAAAACGATCCCGTCGTCTGGATCG
AATCCCTGCGCCTGGCAGACGACCGGGCCATCTGCGTGATTTCCCATTTCCTGCCGCGGCAGGCCTTCCCCGACGTGCTG
GCGGACTACCCCGGCGGCTCGCTGCACGAACATCTTGCCGTCCGCCACGGACTGAAGCTGCGGCGCATCGAAAGCCTGGT
CAGCGCGGCACTCCCGCAAGGCGACGACGCCTCGCTGCTGGGCATGGCCCAGAACCAGCCGGTGCTGCGGGTCAAAAGCG
TCAATGTAGACGAGCGGGACGGTACCCCGCTCGAATACGCCCTGACCCGGTTCCGCGCCGACCGGATCCAACTGCGCATC
AATCCTTGA

Upstream 100 bases:

>100_bases
GAGGGACCGATTCAAGTTTCAGTTCACCCCCGGAATTTCCATCATCATACGGTCACATTGAACCCCTAGAGTTCCCGAAA
CGTCATGTGGGGATGTCTAG

Downstream 100 bases:

>100_bases
CCTGTCTATCGATCAATCTTACGGGAGCAACCGCAATGTATGTGAAACACACTTTCTCGGCAAGCGCGCTGGCGCTGGTC
CTTTCCCTCGCCGCCGCATC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSLVALQRNGGEAIYSQIAKLLKGEIASFLSPGACLPSENELAERFGVNRHTIRRAVEDLIAAGLLERRHGKGTFVLDAP
ADYVLGSGTRFTETFESLGKTASSRVLRKLVIPARGGVATRLRLAENDPVVWIESLRLADDRAICVISHFLPRQAFPDVL
ADYPGGSLHEHLAVRHGLKLRRIESLVSAALPQGDDASLLGMAQNQPVLRVKSVNVDERDGTPLEYALTRFRADRIQLRI
NP

Sequences:

>Translated_242_residues
MSLVALQRNGGEAIYSQIAKLLKGEIASFLSPGACLPSENELAERFGVNRHTIRRAVEDLIAAGLLERRHGKGTFVLDAP
ADYVLGSGTRFTETFESLGKTASSRVLRKLVIPARGGVATRLRLAENDPVVWIESLRLADDRAICVISHFLPRQAFPDVL
ADYPGGSLHEHLAVRHGLKLRRIESLVSAALPQGDDASLLGMAQNQPVLRVKSVNVDERDGTPLEYALTRFRADRIQLRI
NP
>Mature_241_residues
SLVALQRNGGEAIYSQIAKLLKGEIASFLSPGACLPSENELAERFGVNRHTIRRAVEDLIAAGLLERRHGKGTFVLDAPA
DYVLGSGTRFTETFESLGKTASSRVLRKLVIPARGGVATRLRLAENDPVVWIESLRLADDRAICVISHFLPRQAFPDVLA
DYPGGSLHEHLAVRHGLKLRRIESLVSAALPQGDDASLLGMAQNQPVLRVKSVNVDERDGTPLEYALTRFRADRIQLRIN
P

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known. By similarity could be a transcriptional regulator [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=226, Percent_Identity=34.070796460177, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=28.3185840707965, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=27.8761061946903, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082252, Length=244, Percent_Identity=27.0491803278689, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788418, Length=222, Percent_Identity=27.9279279279279, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26534; Mature: 26403

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVALQRNGGEAIYSQIAKLLKGEIASFLSPGACLPSENELAERFGVNRHTIRRAVEDL
CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
IAAGLLERRHGKGTFVLDAPADYVLGSGTRFTETFESLGKTASSRVLRKLVIPARGGVAT
HHHHHHHHHCCCCCEEEECCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEE
RLRLAENDPVVWIESLRLADDRAICVISHFLPRQAFPDVLADYPGGSLHEHLAVRHGLKL
EEEECCCCCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHCCHH
RRIESLVSAALPQGDDASLLGMAQNQPVLRVKSVNVDERDGTPLEYALTRFRADRIQLRI
HHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCEEEEEE
NP
CC
>Mature Secondary Structure 
SLVALQRNGGEAIYSQIAKLLKGEIASFLSPGACLPSENELAERFGVNRHTIRRAVEDL
CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
IAAGLLERRHGKGTFVLDAPADYVLGSGTRFTETFESLGKTASSRVLRKLVIPARGGVAT
HHHHHHHHHCCCCCEEEECCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEE
RLRLAENDPVVWIESLRLADDRAICVISHFLPRQAFPDVLADYPGGSLHEHLAVRHGLKL
EEEECCCCCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHCCHH
RRIESLVSAALPQGDDASLLGMAQNQPVLRVKSVNVDERDGTPLEYALTRFRADRIQLRI
HHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCEEEEEE
NP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]