| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ptxB [H]
Identifier: 74318318
GI number: 74318318
Start: 2372805
End: 2373677
Strand: Reverse
Name: ptxB [H]
Synonym: Tbd_2300
Alternate gene names: 74318318
Gene position: 2373677-2372805 (Counterclockwise)
Preceding gene: 74318319
Following gene: 74318317
Centisome position: 81.58
GC content: 61.86
Gene sequence:
>873_bases ATGTATGTGAAACACACTTTCTCGGCAAGCGCGCTGGCGCTGGTCCTTTCCCTCGCCGCCGCATCCGCCCAGGCGCGCGA CATCGTCATGGGCCTCATCCCGGCGGAAAACAATGAAGAAATGGTGCAGAAGTTCGAGCCCATGCGCGCCCACCTGGAGA AGAAACTGGGCCAGAAGGTGAAGGTGTACACCGCCACCGACTACGCCGGCGTCATCGAAGGCATGAAGAAGAAGCGCGTC GACGTCGCCTGGTTCGGCCCGCTGTCCTATTACCTGGCCGAGCAGGAAGCCGGCGCCGAGGCCTTCGCCGTCGGCATCCG CGAGGGCGGCACCACCCATACCTACAAGAGCCTCTTCGTCGCGCCCTGCGACGCCGGCGTCAAGTCGATCAAGGACCTGA AGGGCAAGAGCGTGGCCTTCGTCGATCCGGCCTCGACATCGGGCGGCCTGATGCCGACCTACATGGTCAAGAAGGAAACC GGCATGATGCCGCAGCAGTTCTTCGGCAAGTTCACCTACTCCGGCTCGCACGACGCCGCCGAGCTGGCGGTCAAGAACAA GACCGTGGACGCCGCCGCCGACAACGACATCACCTACGAGAAGATGCTCGCCAAGGGCCTCATCACCAAAGAGACCAACT GCGTCGTCAAGGAATCCGATCCGCTGCCGGGCTCGCCCCTGGTCTATCGCAAGGATCTGCCGGCGGCGACGAAAAAGAAA ATCCGGGACGCCATCCTGAACGCCCACAAGGAAATCAAGGTCAGCGGCTACGGCAACCTGAGCCATTACGTGGCGGTCGC GCCCAAGGATTACCAGATGATCCGCGACATGGTGAAGGACCTGGGCCTGAAGAAGAACGACCTGCTCAAGTAA
Upstream 100 bases:
>100_bases CCCCGCTCGAATACGCCCTGACCCGGTTCCGCGCCGACCGGATCCAACTGCGCATCAATCCTTGACCTGTCTATCGATCA ATCTTACGGGAGCAACCGCA
Downstream 100 bases:
>100_bases GGGCAGAGGGGAAGACAGGCCGCCTTGGCCTGTCTTCCCGGACCAAGGAGAAAATCATGTCCGCGATTTCCATTCAATCC GTGACCAAGCGCTTCCCGAA
Product: phosphonate-binding periplasmic protein
Products: 3-phospho-serine [Cytoplasm]; phosphate [Cytoplasm]; alkylphosphonate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MYVKHTFSASALALVLSLAAASAQARDIVMGLIPAENNEEMVQKFEPMRAHLEKKLGQKVKVYTATDYAGVIEGMKKKRV DVAWFGPLSYYLAEQEAGAEAFAVGIREGGTTHTYKSLFVAPCDAGVKSIKDLKGKSVAFVDPASTSGGLMPTYMVKKET GMMPQQFFGKFTYSGSHDAAELAVKNKTVDAAADNDITYEKMLAKGLITKETNCVVKESDPLPGSPLVYRKDLPAATKKK IRDAILNAHKEIKVSGYGNLSHYVAVAPKDYQMIRDMVKDLGLKKNDLLK
Sequences:
>Translated_290_residues MYVKHTFSASALALVLSLAAASAQARDIVMGLIPAENNEEMVQKFEPMRAHLEKKLGQKVKVYTATDYAGVIEGMKKKRV DVAWFGPLSYYLAEQEAGAEAFAVGIREGGTTHTYKSLFVAPCDAGVKSIKDLKGKSVAFVDPASTSGGLMPTYMVKKET GMMPQQFFGKFTYSGSHDAAELAVKNKTVDAAADNDITYEKMLAKGLITKETNCVVKESDPLPGSPLVYRKDLPAATKKK IRDAILNAHKEIKVSGYGNLSHYVAVAPKDYQMIRDMVKDLGLKKNDLLK >Mature_290_residues MYVKHTFSASALALVLSLAAASAQARDIVMGLIPAENNEEMVQKFEPMRAHLEKKLGQKVKVYTATDYAGVIEGMKKKRV DVAWFGPLSYYLAEQEAGAEAFAVGIREGGTTHTYKSLFVAPCDAGVKSIKDLKGKSVAFVDPASTSGGLMPTYMVKKET GMMPQQFFGKFTYSGSHDAAELAVKNKTVDAAADNDITYEKMLAKGLITKETNCVVKESDPLPGSPLVYRKDLPAATKKK IRDAILNAHKEIKVSGYGNLSHYVAVAPKDYQMIRDMVKDLGLKKNDLLK
Specific function: Probably forms part of a binding-protein-dependent phosphite transporter. Required for oxidation of phosphite to phosphate [H]
COG id: COG3221
COG function: function code P; ABC-type phosphate/phosphonate transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790543, Length=244, Percent_Identity=34.8360655737705, Blast_Score=134, Evalue=7e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR005770 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 31638; Mature: 31638
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVKHTFSASALALVLSLAAASAQARDIVMGLIPAENNEEMVQKFEPMRAHLEKKLGQKV CCEECCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE KVYTATDYAGVIEGMKKKRVDVAWFGPLSYYLAEQEAGAEAFAVGIREGGTTHTYKSLFV EEEEECCHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEE APCDAGVKSIKDLKGKSVAFVDPASTSGGLMPTYMVKKETGMMPQQFFGKFTYSGSHDAA ECCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHCCCCCHHHHCCCCCCCCCCHH ELAVKNKTVDAAADNDITYEKMLAKGLITKETNCVVKESDPLPGSPLVYRKDLPAATKKK HHEEECCEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCHHHHHH IRDAILNAHKEIKVSGYGNLSHYVAVAPKDYQMIRDMVKDLGLKKNDLLK HHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure MYVKHTFSASALALVLSLAAASAQARDIVMGLIPAENNEEMVQKFEPMRAHLEKKLGQKV CCEECCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE KVYTATDYAGVIEGMKKKRVDVAWFGPLSYYLAEQEAGAEAFAVGIREGGTTHTYKSLFV EEEEECCHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEE APCDAGVKSIKDLKGKSVAFVDPASTSGGLMPTYMVKKETGMMPQQFFGKFTYSGSHDAA ECCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHCCCCCHHHHCCCCCCCCCCHH ELAVKNKTVDAAADNDITYEKMLAKGLITKETNCVVKESDPLPGSPLVYRKDLPAATKKK HHEEECCEECCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCHHHHHH IRDAILNAHKEIKVSGYGNLSHYVAVAPKDYQMIRDMVKDLGLKKNDLLK HHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; 3-phospho-serine [Periplasm]; phosphite [Periplasm]; H2O; phosphate [Periplasm]; alkylphosphonate [Periplasm] [C]
Specific reaction: H2O + ATP + 3-phospho-serine [Periplasm] = ADP + phosphate + 3-phospho-serine [Cytoplasm] ATP + phosphite [Periplasm] + H2O = phosphite [Cytoplasm] + ADP + phosphate phosphate [Periplasm] + ATP + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] A
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9791102 [H]