| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is mod [H]
Identifier: 74318294
GI number: 74318294
Start: 2349228
End: 2350907
Strand: Reverse
Name: mod [H]
Synonym: Tbd_2276
Alternate gene names: 74318294
Gene position: 2350907-2349228 (Counterclockwise)
Preceding gene: 74318295
Following gene: 74318293
Centisome position: 80.79
GC content: 60.3
Gene sequence:
>1680_bases TTGCCAGGCTGTGGCTCGGGGCCTGATGGCTACCGCGCAAGCCAGAAACTGACCGCTACAACCAACAACATGCCAACACT GCACTGGGTAGGAAAAGACAAGGTGATCAACCACCACCACGATGTGCCGTTTCGCGTGCTCCAGAAGGTTTCGACCTTTA CCGCGCCCGAAGGCACGCCCGCGAATACCACCGACAACCGCATCATCCACGGCGACAACCTCGAAGCCCTGAAGAGCCTG CTACCCGAGTTCGAGGGCCGCGTGAAGTGCATCTACATCGATCCGCCGTACAACACCGGCAACGAGGGGTGGGTCTACAA CGACGCCGTCAACGATCCGAAGATCAAGCGCTGGCTCGGCCAAGTGGTGGGCAAGGAAGGCGAGGACCTGTCGCGCCACG ACAAGTGGCTGTGCATGATGTATCCGCGTCTGAAACTCCTGCATCGCTTGCTGCATGACGACGGGTCAATTTGGGTTTCG ATTGACGACAACGCCTCCGGCCTGCTGCGTCCATTGTTGGACGAAATTTTCGGGGGTGCCAACTTCGTCGCGACCGTCAT CTGGGAAAAGGCAGACTCCCCCAGGAACTCGGCGCGCCAGTTCTCGACCGATCACGACTACATCCTCGTCTACTCCAAGA AGCCAGGCTGGACGCCTGCTCGCCTGCCACGCAACGAAGAATCCGATGCGATCTATCAAAATCAGGATGATGACGAGCGC GGCCCTTGGATACCAGGCGATCCCTTTGCCAACAAGCCGTATTCAAAGGGCTTGTACACGATCACGGGGCCTACCGGCCG GGAGTTTTCGCCTCCGGCTGGTCGCTACTGGCGTGTGTCAGAGGAAAAGCTGAGGGAGTTGGATGACGACGGCCGGATTT GGTGGGGTCCGACCGGCGAAGCTAGGCCCAGCATCAAACGCTATTTGAACGAGGTGGCCGACCTTGTGCCCCGCACACTC TGGACCAAGGAGGCCGTAGGTAGCAATCGTTCGTCCAAAAACGAACAGCGCGCGATCTTTGCTGGCACTGCGTCGTTTGA CACGCCGAAGCCCAGCGCATTGATCGAGCGAGTTATCCAGATAGCAGCGTCGTCCAGCGACATCGTGCTGGATTCTTTCG CTGGCTCCGGAACAACTGGGCACGCAGTGATGAAGCTGAACGCTCAGGACTCAGGGGCGCGGCGCTTCGTGATGATCGAG ACCGAAAGCTATGCGGATACGTTGACCGCCGAGCGGATCAGACGGGTGATGACTGGCTACGGCGAAGGCACGAAGGCAAT GCAAGGCCTCGGCGGCGGCTTCGACTACTACATCGTCGGCGAGCCGATGTTTCTACCCGACGACAACCTCAATGAAGCCG CCGGCACCGAGGCCATCCGGGGCTACGTGGCCTACAGCGAGGGCATCCCCACTGCCGACCAGACCACAACCGACAACCCG CACAGCCCTTATCTGCTGGGCCTGAACCGGGAAACGGCCTGGCTCTTCCACTACGAGCCGGACCGTGCGACCAGCCTGGA CATGGACTTTCTGGCCGGCCTGCGCTTTGGCGGCGATACCGGCGCCGGCAAGCCCGACACTGTGATCGTCTACGCCGACC GTTGCCTGCTGTCGAAGGACTTCATGATCCGGCACGGCATCGTCTTCAAGAAGATTCCCCGCGACATCACCCGCTTCTGA
Upstream 100 bases:
>100_bases TACCTGCACGGCGATTACCTGATTCTGTATATCGCATCGGAAACCGATGCCACCGTTTACCTGCTGTCCGTCCGGCATCA CCGCCAGCTTTCGTTCGACT
Downstream 100 bases:
>100_bases CCGAAAAGAACAACAACGAGAGCAGACACACCATGGAACTCAAGGATTATCAGGCCCGCGTGCTGGCCGATCTGGCGGGC TACCTCGACGTGCTGGACGG
Product: adenine specific DNA methylase
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MPGCGSGPDGYRASQKLTATTNNMPTLHWVGKDKVINHHHDVPFRVLQKVSTFTAPEGTPANTTDNRIIHGDNLEALKSL LPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLGQVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVS IDDNASGLLRPLLDEIFGGANFVATVIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDER GPWIPGDPFANKPYSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGEARPSIKRYLNEVADLVPRTL WTKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQIAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIE TESYADTLTAERIRRVMTGYGEGTKAMQGLGGGFDYYIVGEPMFLPDDNLNEAAGTEAIRGYVAYSEGIPTADQTTTDNP HSPYLLGLNRETAWLFHYEPDRATSLDMDFLAGLRFGGDTGAGKPDTVIVYADRCLLSKDFMIRHGIVFKKIPRDITRF
Sequences:
>Translated_559_residues MPGCGSGPDGYRASQKLTATTNNMPTLHWVGKDKVINHHHDVPFRVLQKVSTFTAPEGTPANTTDNRIIHGDNLEALKSL LPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLGQVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVS IDDNASGLLRPLLDEIFGGANFVATVIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDER GPWIPGDPFANKPYSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGEARPSIKRYLNEVADLVPRTL WTKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQIAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIE TESYADTLTAERIRRVMTGYGEGTKAMQGLGGGFDYYIVGEPMFLPDDNLNEAAGTEAIRGYVAYSEGIPTADQTTTDNP HSPYLLGLNRETAWLFHYEPDRATSLDMDFLAGLRFGGDTGAGKPDTVIVYADRCLLSKDFMIRHGIVFKKIPRDITRF >Mature_558_residues PGCGSGPDGYRASQKLTATTNNMPTLHWVGKDKVINHHHDVPFRVLQKVSTFTAPEGTPANTTDNRIIHGDNLEALKSLL PEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLGQVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVSI DDNASGLLRPLLDEIFGGANFVATVIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDERG PWIPGDPFANKPYSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGEARPSIKRYLNEVADLVPRTLW TKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQIAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIET ESYADTLTAERIRRVMTGYGEGTKAMQGLGGGFDYYIVGEPMFLPDDNLNEAAGTEAIRGYVAYSEGIPTADQTTTDNPH SPYLLGLNRETAWLFHYEPDRATSLDMDFLAGLRFGGDTGAGKPDTVIVYADRCLLSKDFMIRHGIVFKKIPRDITRF
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 62359; Mature: 62227
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGCGSGPDGYRASQKLTATTNNMPTLHWVGKDKVINHHHDVPFRVLQKVSTFTAPEGTP CCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCC ANTTDNRIIHGDNLEALKSLLPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLG CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHH QVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVSIDDNASGLLRPLLDEIFGGA HHHCCCCCCHHHHCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC NFVATVIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDER CEEEEEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC GPWIPGDPFANKPYSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGE CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCEEECCCCC ARPSIKRYLNEVADLVPRTLWTKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH IAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIETESYADTLTAERIRRVMTGY HHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCC GEGTKAMQGLGGGFDYYIVGEPMFLPDDNLNEAAGTEAIRGYVAYSEGIPTADQTTTDNP CCCHHHHHHCCCCCEEEEECCEEECCCCCCCHHHCHHHHHEEEEECCCCCCCCCCCCCCC HSPYLLGLNRETAWLFHYEPDRATSLDMDFLAGLRFGGDTGAGKPDTVIVYADRCLLSKD CCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC FMIRHGIVFKKIPRDITRF HHHHCCHHHHHCCHHHHCC >Mature Secondary Structure PGCGSGPDGYRASQKLTATTNNMPTLHWVGKDKVINHHHDVPFRVLQKVSTFTAPEGTP CCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHCCCCCCC ANTTDNRIIHGDNLEALKSLLPEFEGRVKCIYIDPPYNTGNEGWVYNDAVNDPKIKRWLG CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHH QVVGKEGEDLSRHDKWLCMMYPRLKLLHRLLHDDGSIWVSIDDNASGLLRPLLDEIFGGA HHHCCCCCCHHHHCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC NFVATVIWEKADSPRNSARQFSTDHDYILVYSKKPGWTPARLPRNEESDAIYQNQDDDER CEEEEEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC GPWIPGDPFANKPYSKGLYTITGPTGREFSPPAGRYWRVSEEKLRELDDDGRIWWGPTGE CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCEEECCCCC ARPSIKRYLNEVADLVPRTLWTKEAVGSNRSSKNEQRAIFAGTASFDTPKPSALIERVIQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH IAASSSDIVLDSFAGSGTTGHAVMKLNAQDSGARRFVMIETESYADTLTAERIRRVMTGY HHCCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCC GEGTKAMQGLGGGFDYYIVGEPMFLPDDNLNEAAGTEAIRGYVAYSEGIPTADQTTTDNP CCCHHHHHHCCCCCEEEEECCEEECCCCCCCHHHCHHHHHEEEEECCCCCCCCCCCCCCC HSPYLLGLNRETAWLFHYEPDRATSLDMDFLAGLRFGGDTGAGKPDTVIVYADRCLLSKD CCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC FMIRHGIVFKKIPRDITRF HHHHCCHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]