| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318293
Identifier: 74318293
GI number: 74318293
Start: 2346487
End: 2349195
Strand: Reverse
Name: 74318293
Synonym: Tbd_2275
Alternate gene names: NA
Gene position: 2349195-2346487 (Counterclockwise)
Preceding gene: 74318294
Following gene: 74318288
Centisome position: 80.73
GC content: 61.35
Gene sequence:
>2709_bases ATGGAACTCAAGGATTATCAGGCCCGCGTGCTGGCCGATCTGGCGGGCTACCTCGACGTGCTGGACGGCACGCCCAATCT TGCGCAGGCGTTCCGGGACTACTGGGCCGGCAAAGGCGTGCGGGTAGGCGGCGACGACGGTATCGAGCCCTACAAGAACA CCGTGCCCGGCGTGCCGCACATCTGCGCCAAGGTGCCCACGGCGGGCGGCAAAACTTTCATTGCCGTGAACGCGCTCGAT ACGGTCTTTACCGCGTTGGCCAAACGCAGCCCAAGGCGGCCGAAGATGGTGGTGTGGCTGGTGCCTTCGCTGACCATCCT GGACCAGACGGTGAAGGCACTGAACAGCCCGGAGCATCCGTATCGAAAAAGGTTGGATCAGTTATTCCGGCATCGGGTGG CGGTGTACGAGAAGCGCGACCTGTTGATGGGCGCCGGCTTCTCCTACGACACGGCACAGGAGCAACTGTCCATCGTTGTG ATGAGCTTCGATTCGCTGCGCGCCCGCAACAAGGAAGACCGCAAGATTTACCAGGAGAACGGCAACCTGGCTTCTTTCCT GCAGCCTGACCAGGGCGACCCCGGCGACTGGCTGCTGCCCGAGCACGATGCTTCGGCCCTGATCAACGTGATCCGGCGGC TGCGGCCGGTGGTGGTGGTGGACGAGAGCCACAACGCCGAGAGCCAGTTGTCGGTGGAGATGACGACGAACCTGAACCCG GACTTCATCCTCGACCTGACCGCCACGCCGCGCAACAACAGCAACATCATCAGTTTCGTGGACGCGCTGGCGCTGAAAAA GCAGCACATGGTGAAGCTGCCGGTGATCGTGGCCAACCGCACCAGCAAGGGCGAGGTGATCGAGTCGGCGCTGATCCTGC GCAGGCAGCTCGAAGACCTGGCCAAGCAGGAAGAGGCGGCAGGCGGCAAGTACATCCGCCCCATCGTGCTGTTCCAGGCG CAGCCGCGCACGGATGAGGACAACACCACCTTCGAGAAGATTCGCGAGAAGCTGATTGAGCTGAAGATTCCGGCCGAGCA GATCAAGATCAAGACCGCCGACATCAACGAGCTGAAAGACGTTGACTTGATGAAACGGGATTGCCCGGTGCGTTTCATCA TTACGGTGAACGCGCTCAAGGAGGGCTGGGATTGCCCGTTTGCGTACATCCTGGCTTCGCTGGCCGACAAGACTTCGGCC GTGGACGTAGAGCAGATACTGGGGCGCGTGCTGCGCATGCCGCATGTCCAACAGCACGGCCATGACCTGCTGAACCTCGC CTATGTATTTACCGCCAGCAACCGCTTCATGGATACGCTGCAAAGCGTGGTGAAGGGCCTGAACCGCGCCGGCTTTTCTG ACAAGGACTATCGCGCCATCGACGCCCAGGCAGCGGACACGGCGGCACAAGCGGGTGCTGCCGGTACCGAGCAACTGCCC TTGGGGGGGCTGTTTGGGCAGGCAACAGCCGATGCCGAGGCAGAACCGGTCGGTGAACTGGACGTGAGCGGCGTTTCACC AGATTGGGAGGCCGCAGCCGCTACCACGGCGCAGGCTGGCACGGGCGCGAGGGAGTCCGGCGCCACGACGCCAGACGTCA CACCGGCCAGCGCGGCCTTCGTCGCCGACATCAAAGCCCGCGCACTGGCTGAAAACCAGGCCTTCGAGGAAAAGGCGCAG GCCGGCAACGACGACGTTTCACCGGAACTGGAAGACAAGATGAACCGCCACAAGATCAAAGACATCTTCCGCGACGAAGC CTTGGCGGTACGCCTGCCGCAGTTCTTCATCCAGGTGCAGAACGGCGGCTTCTTCACGGAAGAGCAGCCGTTTCAGTTGT TCGAGCGCGAGGAATTACTTAAGGACTTTCGCCTGTCGCAGGGCGACGCGACGATCTCGTTCGAGGATGTCGAAACCGAG ATTTATCGTGTCGACCTGGAGCAGTTGGGCGATGAGAACTACGCGCCGCGTGCTTTCAAATTGGCGGCGCGTGAGCGCGT GCAGTTCACCAACTACCTGCTGGCGTTGTCGCACGAAAGCCAGATGATGAACCTCGTGTCACGCCTGACTGAACTCGTGG GCAACATGTACCCGATCACCGACCCCGAGGTGAAGGAGTACATCCGTCGCGTGGTGACCGGCATGAATGCCGAGCAAATC CGTGATTGCATCGAGCGCGATGTGGCCTACGTCCGCAAGATCAAGCAGAAGATCACGGCGCTGGCCAACGCGCATGCGCA GAAAACCTTCACCGACATGCTGGACGTAGACCGGATCGCCATGCAGCCAAGTTTCGCGCTGCCGGACTCGATCACGCCCA GCGCCAATGCCTCCGCGGTGCCGAAGAGCTTGTACGTCACCGAAGCCGCCATGGGGGACTTCGAGCGCCGCGTAATTAAC GACGTAGCCAACCTGGGCAGCGTGCAGTGGTGGCACCGTAATGGCTCGCGTGGGAAGGGCTTCAGGATCAACGGTTTTCT GAACCACTACCCCGACTTCATCGTGAAAACTAAGCCAGGCCGGATCATTTTGTTGGAGACCAAAGGCGACGACCGGGACA ACACGGATTCCGAATTGAAGCTGAAGCTCGGCAAGCTGTGGGAGGCGAAGGCCGGGCGCGGCTATCGCTACATGATGGTG TTCGAGCACAACCCAATCGACGGGGCCGAGCGGCTGGCCGATGCGTTGGTGAAGCTCCGCCAGCTTTGA
Upstream 100 bases:
>100_bases CGAAGGACTTCATGATCCGGCACGGCATCGTCTTCAAGAAGATTCCCCGCGACATCACCCGCTTCTGACCGAAAAGAACA ACAACGAGAGCAGACACACC
Downstream 100 bases:
>100_bases CCAACGCGTAAGCGACCAGCTCAAGGATTTCTGCTCCCTCCGCGGGCCGCATGGATCGGCATCCTGTGTCCCTTTAGGCC GCCTCCTTCGGCCGCATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Type III Restriction Protein Res Subunit; Type III Restriction; Type III Restriction Res Subunit Family; Restriction Endonuclease; Type III Restriction Res Subunit Superfamily; Type III Restriction- System RcaSBIIP Res Subunit
Number of amino acids: Translated: 902; Mature: 902
Protein sequence:
>902_residues MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV FEHNPIDGAERLADALVKLRQL
Sequences:
>Translated_902_residues MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV FEHNPIDGAERLADALVKLRQL >Mature_902_residues MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV FEHNPIDGAERLADALVKLRQL
Specific function: Unknown
COG id: COG3587
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100601; Mature: 100601
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPH CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCCCH ICAKVPTAGGKTFIAVNALDTVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHP HHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCH YRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVVMSFDSLRARNKEDRKIYQEN HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHEEEEEEHHHHHHCCCHHHHHHHHC GNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECCCCC DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDL CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHH AKQEEAAGGKYIRPIVLFQAQPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKD HHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCHHHHH VDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSAVDVEQILGRVLRMPHVQQHG HHHHHHCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHC HDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCCCC LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH VADIKARALAENQAFEEKAQAGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEEC NGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETEIYRVDLEQLGDENYAPRAFK CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHEEEHHHCCCCCCCCHHHH LAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI HHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHH RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PKSLYVTEAAMGDFERRVINDVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPG CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHCCCCEEEEECCC RIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMVFEHNPIDGAERLADALVKLR EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH QL CC >Mature Secondary Structure MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPH CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCCCH ICAKVPTAGGKTFIAVNALDTVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHP HHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCH YRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVVMSFDSLRARNKEDRKIYQEN HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHEEEEEEHHHHHHCCCHHHHHHHHC GNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECCCCC DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDL CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHH AKQEEAAGGKYIRPIVLFQAQPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKD HHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCHHHHH VDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSAVDVEQILGRVLRMPHVQQHG HHHHHHCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHC HDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCCCC LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH VADIKARALAENQAFEEKAQAGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEEC NGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETEIYRVDLEQLGDENYAPRAFK CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHEEEHHHCCCCCCCCHHHH LAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI HHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHH RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PKSLYVTEAAMGDFERRVINDVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPG CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHCCCCEEEEECCC RIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMVFEHNPIDGAERLADALVKLR EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH QL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA