Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318293

Identifier: 74318293

GI number: 74318293

Start: 2346487

End: 2349195

Strand: Reverse

Name: 74318293

Synonym: Tbd_2275

Alternate gene names: NA

Gene position: 2349195-2346487 (Counterclockwise)

Preceding gene: 74318294

Following gene: 74318288

Centisome position: 80.73

GC content: 61.35

Gene sequence:

>2709_bases
ATGGAACTCAAGGATTATCAGGCCCGCGTGCTGGCCGATCTGGCGGGCTACCTCGACGTGCTGGACGGCACGCCCAATCT
TGCGCAGGCGTTCCGGGACTACTGGGCCGGCAAAGGCGTGCGGGTAGGCGGCGACGACGGTATCGAGCCCTACAAGAACA
CCGTGCCCGGCGTGCCGCACATCTGCGCCAAGGTGCCCACGGCGGGCGGCAAAACTTTCATTGCCGTGAACGCGCTCGAT
ACGGTCTTTACCGCGTTGGCCAAACGCAGCCCAAGGCGGCCGAAGATGGTGGTGTGGCTGGTGCCTTCGCTGACCATCCT
GGACCAGACGGTGAAGGCACTGAACAGCCCGGAGCATCCGTATCGAAAAAGGTTGGATCAGTTATTCCGGCATCGGGTGG
CGGTGTACGAGAAGCGCGACCTGTTGATGGGCGCCGGCTTCTCCTACGACACGGCACAGGAGCAACTGTCCATCGTTGTG
ATGAGCTTCGATTCGCTGCGCGCCCGCAACAAGGAAGACCGCAAGATTTACCAGGAGAACGGCAACCTGGCTTCTTTCCT
GCAGCCTGACCAGGGCGACCCCGGCGACTGGCTGCTGCCCGAGCACGATGCTTCGGCCCTGATCAACGTGATCCGGCGGC
TGCGGCCGGTGGTGGTGGTGGACGAGAGCCACAACGCCGAGAGCCAGTTGTCGGTGGAGATGACGACGAACCTGAACCCG
GACTTCATCCTCGACCTGACCGCCACGCCGCGCAACAACAGCAACATCATCAGTTTCGTGGACGCGCTGGCGCTGAAAAA
GCAGCACATGGTGAAGCTGCCGGTGATCGTGGCCAACCGCACCAGCAAGGGCGAGGTGATCGAGTCGGCGCTGATCCTGC
GCAGGCAGCTCGAAGACCTGGCCAAGCAGGAAGAGGCGGCAGGCGGCAAGTACATCCGCCCCATCGTGCTGTTCCAGGCG
CAGCCGCGCACGGATGAGGACAACACCACCTTCGAGAAGATTCGCGAGAAGCTGATTGAGCTGAAGATTCCGGCCGAGCA
GATCAAGATCAAGACCGCCGACATCAACGAGCTGAAAGACGTTGACTTGATGAAACGGGATTGCCCGGTGCGTTTCATCA
TTACGGTGAACGCGCTCAAGGAGGGCTGGGATTGCCCGTTTGCGTACATCCTGGCTTCGCTGGCCGACAAGACTTCGGCC
GTGGACGTAGAGCAGATACTGGGGCGCGTGCTGCGCATGCCGCATGTCCAACAGCACGGCCATGACCTGCTGAACCTCGC
CTATGTATTTACCGCCAGCAACCGCTTCATGGATACGCTGCAAAGCGTGGTGAAGGGCCTGAACCGCGCCGGCTTTTCTG
ACAAGGACTATCGCGCCATCGACGCCCAGGCAGCGGACACGGCGGCACAAGCGGGTGCTGCCGGTACCGAGCAACTGCCC
TTGGGGGGGCTGTTTGGGCAGGCAACAGCCGATGCCGAGGCAGAACCGGTCGGTGAACTGGACGTGAGCGGCGTTTCACC
AGATTGGGAGGCCGCAGCCGCTACCACGGCGCAGGCTGGCACGGGCGCGAGGGAGTCCGGCGCCACGACGCCAGACGTCA
CACCGGCCAGCGCGGCCTTCGTCGCCGACATCAAAGCCCGCGCACTGGCTGAAAACCAGGCCTTCGAGGAAAAGGCGCAG
GCCGGCAACGACGACGTTTCACCGGAACTGGAAGACAAGATGAACCGCCACAAGATCAAAGACATCTTCCGCGACGAAGC
CTTGGCGGTACGCCTGCCGCAGTTCTTCATCCAGGTGCAGAACGGCGGCTTCTTCACGGAAGAGCAGCCGTTTCAGTTGT
TCGAGCGCGAGGAATTACTTAAGGACTTTCGCCTGTCGCAGGGCGACGCGACGATCTCGTTCGAGGATGTCGAAACCGAG
ATTTATCGTGTCGACCTGGAGCAGTTGGGCGATGAGAACTACGCGCCGCGTGCTTTCAAATTGGCGGCGCGTGAGCGCGT
GCAGTTCACCAACTACCTGCTGGCGTTGTCGCACGAAAGCCAGATGATGAACCTCGTGTCACGCCTGACTGAACTCGTGG
GCAACATGTACCCGATCACCGACCCCGAGGTGAAGGAGTACATCCGTCGCGTGGTGACCGGCATGAATGCCGAGCAAATC
CGTGATTGCATCGAGCGCGATGTGGCCTACGTCCGCAAGATCAAGCAGAAGATCACGGCGCTGGCCAACGCGCATGCGCA
GAAAACCTTCACCGACATGCTGGACGTAGACCGGATCGCCATGCAGCCAAGTTTCGCGCTGCCGGACTCGATCACGCCCA
GCGCCAATGCCTCCGCGGTGCCGAAGAGCTTGTACGTCACCGAAGCCGCCATGGGGGACTTCGAGCGCCGCGTAATTAAC
GACGTAGCCAACCTGGGCAGCGTGCAGTGGTGGCACCGTAATGGCTCGCGTGGGAAGGGCTTCAGGATCAACGGTTTTCT
GAACCACTACCCCGACTTCATCGTGAAAACTAAGCCAGGCCGGATCATTTTGTTGGAGACCAAAGGCGACGACCGGGACA
ACACGGATTCCGAATTGAAGCTGAAGCTCGGCAAGCTGTGGGAGGCGAAGGCCGGGCGCGGCTATCGCTACATGATGGTG
TTCGAGCACAACCCAATCGACGGGGCCGAGCGGCTGGCCGATGCGTTGGTGAAGCTCCGCCAGCTTTGA

Upstream 100 bases:

>100_bases
CGAAGGACTTCATGATCCGGCACGGCATCGTCTTCAAGAAGATTCCCCGCGACATCACCCGCTTCTGACCGAAAAGAACA
ACAACGAGAGCAGACACACC

Downstream 100 bases:

>100_bases
CCAACGCGTAAGCGACCAGCTCAAGGATTTCTGCTCCCTCCGCGGGCCGCATGGATCGGCATCCTGTGTCCCTTTAGGCC
GCCTCCTTCGGCCGCATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Type III Restriction Protein Res Subunit; Type III Restriction; Type III Restriction Res Subunit Family; Restriction Endonuclease; Type III Restriction Res Subunit Superfamily; Type III Restriction- System RcaSBIIP Res Subunit

Number of amino acids: Translated: 902; Mature: 902

Protein sequence:

>902_residues
MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD
TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV
MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP
DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA
QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA
VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP
LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ
AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE
IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI
RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN
DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV
FEHNPIDGAERLADALVKLRQL

Sequences:

>Translated_902_residues
MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD
TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV
MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP
DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA
QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA
VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP
LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ
AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE
IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI
RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN
DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV
FEHNPIDGAERLADALVKLRQL
>Mature_902_residues
MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPHICAKVPTAGGKTFIAVNALD
TVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHPYRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVV
MSFDSLRARNKEDRKIYQENGNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP
DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDLAKQEEAAGGKYIRPIVLFQA
QPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKDVDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSA
VDVEQILGRVLRMPHVQQHGHDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP
LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAFVADIKARALAENQAFEEKAQ
AGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQNGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETE
IYRVDLEQLGDENYAPRAFKLAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI
RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAVPKSLYVTEAAMGDFERRVIN
DVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPGRIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMV
FEHNPIDGAERLADALVKLRQL

Specific function: Unknown

COG id: COG3587

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100601; Mature: 100601

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPH
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCCCH
ICAKVPTAGGKTFIAVNALDTVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHP
HHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCH
YRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVVMSFDSLRARNKEDRKIYQEN
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHEEEEEEHHHHHHCCCHHHHHHHHC
GNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP
CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECCCCC
DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDL
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
AKQEEAAGGKYIRPIVLFQAQPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKD
HHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCHHHHH
VDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSAVDVEQILGRVLRMPHVQQHG
HHHHHHCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHC
HDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCCCC
LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
VADIKARALAENQAFEEKAQAGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEEC
NGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETEIYRVDLEQLGDENYAPRAFK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHEEEHHHCCCCCCCCHHHH
LAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI
HHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHH
RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PKSLYVTEAAMGDFERRVINDVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPG
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHCCCCEEEEECCC
RIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMVFEHNPIDGAERLADALVKLR
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
QL
CC
>Mature Secondary Structure
MELKDYQARVLADLAGYLDVLDGTPNLAQAFRDYWAGKGVRVGGDDGIEPYKNTVPGVPH
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCCCH
ICAKVPTAGGKTFIAVNALDTVFTALAKRSPRRPKMVVWLVPSLTILDQTVKALNSPEHP
HHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCH
YRKRLDQLFRHRVAVYEKRDLLMGAGFSYDTAQEQLSIVVMSFDSLRARNKEDRKIYQEN
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHEEEEEEHHHHHHCCCHHHHHHHHC
GNLASFLQPDQGDPGDWLLPEHDASALINVIRRLRPVVVVDESHNAESQLSVEMTTNLNP
CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEECCCCC
DFILDLTATPRNNSNIISFVDALALKKQHMVKLPVIVANRTSKGEVIESALILRRQLEDL
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
AKQEEAAGGKYIRPIVLFQAQPRTDEDNTTFEKIREKLIELKIPAEQIKIKTADINELKD
HHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCHHHHH
VDLMKRDCPVRFIITVNALKEGWDCPFAYILASLADKTSAVDVEQILGRVLRMPHVQQHG
HHHHHHCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHC
HDLLNLAYVFTASNRFMDTLQSVVKGLNRAGFSDKDYRAIDAQAADTAAQAGAAGTEQLP
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCCCC
LGGLFGQATADAEAEPVGELDVSGVSPDWEAAAATTAQAGTGARESGATTPDVTPASAAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
VADIKARALAENQAFEEKAQAGNDDVSPELEDKMNRHKIKDIFRDEALAVRLPQFFIQVQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHEEEEC
NGGFFTEEQPFQLFEREELLKDFRLSQGDATISFEDVETEIYRVDLEQLGDENYAPRAFK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHEEEHHHCCCCCCCCHHHH
LAARERVQFTNYLLALSHESQMMNLVSRLTELVGNMYPITDPEVKEYIRRVVTGMNAEQI
HHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHH
RDCIERDVAYVRKIKQKITALANAHAQKTFTDMLDVDRIAMQPSFALPDSITPSANASAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PKSLYVTEAAMGDFERRVINDVANLGSVQWWHRNGSRGKGFRINGFLNHYPDFIVKTKPG
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHCCCCEEEEECCC
RIILLETKGDDRDNTDSELKLKLGKLWEAKAGRGYRYMMVFEHNPIDGAERLADALVKLR
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
QL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA