Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 74318289

GI number: 74318289

Start: 2342437

End: 2343003

Strand: Direct

Name: pdtaR [H]

Synonym: Tbd_2271

Alternate gene names: 74318289

Gene position: 2342437-2343003 (Clockwise)

Preceding gene: 74318287

Following gene: 74318290

Centisome position: 80.5

GC content: 68.78

Gene sequence:

>567_bases
ATGCGCGTACTGATCGTAGAGAACCAGCCGGAACGGCTGGCAATGCTGGTGCCCGCGCTCGAGCACGCGGGCTGCGTGGT
CGCGGCGACGCTCGATTCGGCGCGCAGCCTCGACGCACAGGTCCGGACGCTGCAGCCCGACGTCGTGATCGTCGCGCAGG
ATTCGCCAGACCGCGATACGCTCGAGCAGGTCTGTGTCGCCAGCCGCGACTGCCCACGGCCGATCGTGATGTTCACCGGC
GACGGCAGCCCGGCATCGATCCGCGCCGCGACGCAGGCCGGCGTCACGTCCTACGTCGTCGACGGCCTCGACCCGGCGCG
GCTGCGCGCGATTCTCGACGTCGCGGTCTCGCGCTTCGAGGCCTTCCAGGGCTTGCACGACGAACTCGAGCGAGCACGGC
GCGAACTGTCCGAACGCAAGCTCATCGATCGCGCAAAGGCGCTACTGATCAAGCACAGCGGCGCATCGGAGCCCGAGGTC
TACGGCGAGATGCGCCGCGCGGCGATGGACCGCGGACTGAAGCTTGCCGACATCGCACGACAGATCCTGCAAAAGCCGCC
GGCGTGA

Upstream 100 bases:

>100_bases
TATTCGCACTGCTCACTGGCCGTGGGCGTTGTCGGACAGCACCGATCGACGGCGGTCCGTGTTGCCTTTTTTTGGACGGC
TGCAAACGGGCGGATAGAAC

Downstream 100 bases:

>100_bases
GCGGGTCGCCTTGGTGCGCGACACGGCTTCGCTGCACCGGGCGCGTGCGAAAGTCCCGCCACAGGCACGCGCAGCGTTTG
TCGACGTGGTCCGCAAACCC

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRVLIVENQPERLAMLVPALEHAGCVVAATLDSARSLDAQVRTLQPDVVIVAQDSPDRDTLEQVCVASRDCPRPIVMFTG
DGSPASIRAATQAGVTSYVVDGLDPARLRAILDVAVSRFEAFQGLHDELERARRELSERKLIDRAKALLIKHSGASEPEV
YGEMRRAAMDRGLKLADIARQILQKPPA

Sequences:

>Translated_188_residues
MRVLIVENQPERLAMLVPALEHAGCVVAATLDSARSLDAQVRTLQPDVVIVAQDSPDRDTLEQVCVASRDCPRPIVMFTG
DGSPASIRAATQAGVTSYVVDGLDPARLRAILDVAVSRFEAFQGLHDELERARRELSERKLIDRAKALLIKHSGASEPEV
YGEMRRAAMDRGLKLADIARQILQKPPA
>Mature_188_residues
MRVLIVENQPERLAMLVPALEHAGCVVAATLDSARSLDAQVRTLQPDVVIVAQDSPDRDTLEQVCVASRDCPRPIVMFTG
DGSPASIRAATQAGVTSYVVDGLDPARLRAILDVAVSRFEAFQGLHDELERARRELSERKLIDRAKALLIKHSGASEPEV
YGEMRRAAMDRGLKLADIARQILQKPPA

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 20531; Mature: 20531

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLIVENQPERLAMLVPALEHAGCVVAATLDSARSLDAQVRTLQPDVVIVAQDSPDRDT
CEEEEECCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHEEECCCEEEEECCCCCHHH
LEQVCVASRDCPRPIVMFTGDGSPASIRAATQAGVTSYVVDGLDPARLRAILDVAVSRFE
HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHH
AFQGLHDELERARRELSERKLIDRAKALLIKHSGASEPEVYGEMRRAAMDRGLKLADIAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
QILQKPPA
HHHHCCCC
>Mature Secondary Structure
MRVLIVENQPERLAMLVPALEHAGCVVAATLDSARSLDAQVRTLQPDVVIVAQDSPDRDT
CEEEEECCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHEEECCCEEEEECCCCCHHH
LEQVCVASRDCPRPIVMFTGDGSPASIRAATQAGVTSYVVDGLDPARLRAILDVAVSRFE
HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHH
AFQGLHDELERARRELSERKLIDRAKALLIKHSGASEPEVYGEMRRAAMDRGLKLADIAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
QILQKPPA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]