Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74318287

Identifier: 74318287

GI number: 74318287

Start: 2340520

End: 2341320

Strand: Direct

Name: 74318287

Synonym: Tbd_2269

Alternate gene names: NA

Gene position: 2340520-2341320 (Clockwise)

Preceding gene: 74318285

Following gene: 74318289

Centisome position: 80.44

GC content: 69.54

Gene sequence:

>801_bases
ATGAAAAGACTCGTCATCGCGGCCGCCATCTTAGCATCGGCCCTTGCGGCGCCCGCGCGCGGCGCCGACGTCGAACTCGT
CAAGGCCACGATCCGCGCGGCCGACGGCAGCGACGTCCCGGTCGAGGTCGCGACGCCTGCCGGCAAGGGTCCGTTCCCGC
CGGTCCTCTTCATCCACGCCAAGCGCGGCTACGAAGGCGACGAGCGCGCCCACGTGCGGGAGCTTGCGGCCCAGGGCTTC
CTCGTCGTCGCCCCGGACTGGCAGAGCGGCCGCTTCATCGAGCGCTGGCCGTCGGCGCACGACCCCGAGACCGAGATGGA
CGTCGAGGCCGGGCTCGACTATCTGAAGTCGCTGCCGAACGCGTGCAAGGGCAAGGTCGGCGTCGTCGGCCTGTCACGCG
GGCCCTATTACGCGATCCGGCTCGCCGCCAAGCGCGGCGCCGACCTCGCCGCGATCGTGAGCTACTACGGCCACATGCAG
AACCCCAACGCGCCCGAGCCGGACCAACTCTTCCGCATCGCGCCCGAAGTCACGCAGATCACGACGCCGATGCTGTTCCT
GATCGGCGACGCCGACTACGAGCTGCGCCGCATGAACGGCGGACGCGCGTTCTATGCGCTGTGGGAGCGCGGGGTGCCGG
TGGAATGGCAGGAATACCCGATGGCGCGGCGCGCGTTCGACTTCCGTCCGGACCAGACGCCGGAGGAAAAAGTCGCGACG
CGGCACGCGCGCGAGCGGGCCAAGAACTGGCTCGTGCAATGGATGAAGCTCTCGCCCGACATGCGCTGCGCACGTTCCTG
A

Upstream 100 bases:

>100_bases
GTCCTGCGCGAACCGGGGCCGCGTCAGGTACGTTTGGACTGCAGGGAAAAGCGACGCGGCGGCCCTAGAATGAGGCCGGG
ACACAGCCAGGGAGCACAGC

Downstream 100 bases:

>100_bases
ACGCCCGGGCCGACCCCGGCGTTCAGCGCGACCAGCCCCACTTGCGGAAGATCGCCTCGCCCGCGTCGGAGGCGAGGAAG
TCGACGAATTCGCGGGCCGG

Product: putative dienelactone hydrolase

Products: NA

Alternate protein names: Carboxymethylenebutenolidase

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKRLVIAAAILASALAAPARGADVELVKATIRAADGSDVPVEVATPAGKGPFPPVLFIHAKRGYEGDERAHVRELAAQGF
LVVAPDWQSGRFIERWPSAHDPETEMDVEAGLDYLKSLPNACKGKVGVVGLSRGPYYAIRLAAKRGADLAAIVSYYGHMQ
NPNAPEPDQLFRIAPEVTQITTPMLFLIGDADYELRRMNGGRAFYALWERGVPVEWQEYPMARRAFDFRPDQTPEEKVAT
RHARERAKNWLVQWMKLSPDMRCARS

Sequences:

>Translated_266_residues
MKRLVIAAAILASALAAPARGADVELVKATIRAADGSDVPVEVATPAGKGPFPPVLFIHAKRGYEGDERAHVRELAAQGF
LVVAPDWQSGRFIERWPSAHDPETEMDVEAGLDYLKSLPNACKGKVGVVGLSRGPYYAIRLAAKRGADLAAIVSYYGHMQ
NPNAPEPDQLFRIAPEVTQITTPMLFLIGDADYELRRMNGGRAFYALWERGVPVEWQEYPMARRAFDFRPDQTPEEKVAT
RHARERAKNWLVQWMKLSPDMRCARS
>Mature_266_residues
MKRLVIAAAILASALAAPARGADVELVKATIRAADGSDVPVEVATPAGKGPFPPVLFIHAKRGYEGDERAHVRELAAQGF
LVVAPDWQSGRFIERWPSAHDPETEMDVEAGLDYLKSLPNACKGKVGVVGLSRGPYYAIRLAAKRGADLAAIVSYYGHMQ
NPNAPEPDQLFRIAPEVTQITTPMLFLIGDADYELRRMNGGRAFYALWERGVPVEWQEYPMARRAFDFRPDQTPEEKVAT
RHARERAKNWLVQWMKLSPDMRCARS

Specific function: Unknown

COG id: COG0412

COG function: function code Q; Dienelactone hydrolase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29540; Mature: 29540

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLVIAAAILASALAAPARGADVELVKATIRAADGSDVPVEVATPAGKGPFPPVLFIHA
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEE
KRGYEGDERAHVRELAAQGFLVVAPDWQSGRFIERWPSAHDPETEMDVEAGLDYLKSLPN
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCHH
ACKGKVGVVGLSRGPYYAIRLAAKRGADLAAIVSYYGHMQNPNAPEPDQLFRIAPEVTQI
HHCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
TTPMLFLIGDADYELRRMNGGRAFYALWERGVPVEWQEYPMARRAFDFRPDQTPEEKVAT
CCCEEEEEECCCCEEEECCCCEEEEEEHHCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHH
RHARERAKNWLVQWMKLSPDMRCARS
HHHHHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MKRLVIAAAILASALAAPARGADVELVKATIRAADGSDVPVEVATPAGKGPFPPVLFIHA
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEE
KRGYEGDERAHVRELAAQGFLVVAPDWQSGRFIERWPSAHDPETEMDVEAGLDYLKSLPN
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCHH
ACKGKVGVVGLSRGPYYAIRLAAKRGADLAAIVSYYGHMQNPNAPEPDQLFRIAPEVTQI
HHCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
TTPMLFLIGDADYELRRMNGGRAFYALWERGVPVEWQEYPMARRAFDFRPDQTPEEKVAT
CCCEEEEEECCCCEEEECCCCEEEEEEHHCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHH
RHARERAKNWLVQWMKLSPDMRCARS
HHHHHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA