Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is tonB [C]

Identifier: 74318286

GI number: 74318286

Start: 2339560

End: 2340411

Strand: Reverse

Name: tonB [C]

Synonym: Tbd_2268

Alternate gene names: 74318286

Gene position: 2340411-2339560 (Counterclockwise)

Preceding gene: 74318288

Following gene: 74318283

Centisome position: 80.43

GC content: 73.47

Gene sequence:

>852_bases
GTGAACCGCGCCGAATTCGAAGAACCGACGATCCCGACGCGGCTGCGCCGCCCGCTCGCCGCGGTCTGGATCTCGATCGG
CGTGCACGCGGCGCTGGTCGCGCTGATCCAGGTCGCGCCGCCAACCTCGCGTGGCGTCGACCCAGCCGTCATCGAGGCGC
GGCTGATCGACGCGTGGACGCAGCAGCGGGAGCCGGCGCAATCCGAAGCCGCGCCGGCCCCCCCGACCACGCGGGTGGCC
GAAGCGCGCCAATCCAACGAGCGCCCGGCCGAGCCGCCCCGAGCGGAACAGCCCCGATCCGAACCAGCAAGCCCCGAAGT
CGCGCCTGTTCGCCGGCCCGCGGCGCCGGACCTTGAGGCGCGCGCGGAGGCCCGACAGGGGAAATCGCCTGATCCGGCGC
CTGCGCCAGCCCAACCGGCGCCCGGTGCGGCCGCGGCTCCGGTGCCAGCGCCCGCCGCGAACGAGGCAAGCGAGGCAAGC
GAGGCAAGCGAGGCAAGCGAGGCGCGCCGGTCGGTCGCCCCGCTCGAAGTCACGAGCGCCGTCGACCTCACCTATTACAG
CGCGCGCGAACTCGACGTGCAGCCGCGCGCGCTGCGCGAAATCGTCCCCGACTATCCGCCGCTCGCCGATCGCAGCAGGA
TCTCCGGCACGGTCCGCCTGCAGGTCGAGCTCGAGGCCGACGGCCGCGTGCGCGACGTCAGCGTCGTCAGCGCCGACCCG
CCCGGCGTGTTCGACGATTCCGCGCGTGCTGCGTTTCGCGAGGCGCGCTTCGCGCCGGCGCAAAGACAGGGTCGCCCGGT
TCGTTCTCGCGTGCTGATCGAGGTCGTGTACGACTGGGAGGGGCGGAATTGA

Upstream 100 bases:

>100_bases
CCCTGGCTGTGTCCCGGCCTCATTCTAGGGCCGCCGCGTCGCTTTTCCCTGCAGTCCAAACGTACCTGACGCGGCCCCGG
TTCGCGCAGGACACGCGCGC

Downstream 100 bases:

>100_bases
GCTCAGTCCGCGCGCGGGGACGCGAGGTCGGCGAGGATCGGGCAATCGGGACGGTGGTCGCCGCGGCAGTCGCGGGCGAG
CGTGACGAGCGTCGCGCGCA

Product: TonB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNRAEFEEPTIPTRLRRPLAAVWISIGVHAALVALIQVAPPTSRGVDPAVIEARLIDAWTQQREPAQSEAAPAPPTTRVA
EARQSNERPAEPPRAEQPRSEPASPEVAPVRRPAAPDLEARAEARQGKSPDPAPAPAQPAPGAAAAPVPAPAANEASEAS
EASEASEARRSVAPLEVTSAVDLTYYSARELDVQPRALREIVPDYPPLADRSRISGTVRLQVELEADGRVRDVSVVSADP
PGVFDDSARAAFREARFAPAQRQGRPVRSRVLIEVVYDWEGRN

Sequences:

>Translated_283_residues
MNRAEFEEPTIPTRLRRPLAAVWISIGVHAALVALIQVAPPTSRGVDPAVIEARLIDAWTQQREPAQSEAAPAPPTTRVA
EARQSNERPAEPPRAEQPRSEPASPEVAPVRRPAAPDLEARAEARQGKSPDPAPAPAQPAPGAAAAPVPAPAANEASEAS
EASEASEARRSVAPLEVTSAVDLTYYSARELDVQPRALREIVPDYPPLADRSRISGTVRLQVELEADGRVRDVSVVSADP
PGVFDDSARAAFREARFAPAQRQGRPVRSRVLIEVVYDWEGRN
>Mature_283_residues
MNRAEFEEPTIPTRLRRPLAAVWISIGVHAALVALIQVAPPTSRGVDPAVIEARLIDAWTQQREPAQSEAAPAPPTTRVA
EARQSNERPAEPPRAEQPRSEPASPEVAPVRRPAAPDLEARAEARQGKSPDPAPAPAQPAPGAAAAPVPAPAANEASEAS
EASEASEARRSVAPLEVTSAVDLTYYSARELDVQPRALREIVPDYPPLADRSRISGTVRLQVELEADGRVRDVSVVSADP
PGVFDDSARAAFREARFAPAQRQGRPVRSRVLIEVVYDWEGRN

Specific function: Interacts With Outer Membrane Receptor Proteins That Carry Out High-Affinity Binding And Energy Dependent Uptake Into The Periplasmic Space Of Specific Substrates Such As Cobalamin, And Various Iron Compounds (Such As Iron Dicitrate, Enterochelin, Aerobac

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Periplasmic Protein. Anchored To The Cytoplasm Membrane VIa Its N-Terminal Signal-Like Sequence, Spans The Periplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30393; Mature: 30393

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRAEFEEPTIPTRLRRPLAAVWISIGVHAALVALIQVAPPTSRGVDPAVIEARLIDAWT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QQREPAQSEAAPAPPTTRVAEARQSNERPAEPPRAEQPRSEPASPEVAPVRRPAAPDLEA
HHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RAEARQGKSPDPAPAPAQPAPGAAAAPVPAPAANEASEASEASEASEARRSVAPLEVTSA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHH
VDLTYYSARELDVQPRALREIVPDYPPLADRSRISGTVRLQVELEADGRVRDVSVVSADP
EEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEEECCC
PGVFDDSARAAFREARFAPAQRQGRPVRSRVLIEVVYDWEGRN
CCCCCCHHHHHHHHHHCCCHHHCCCCHHHEEEEEEEECCCCCC
>Mature Secondary Structure
MNRAEFEEPTIPTRLRRPLAAVWISIGVHAALVALIQVAPPTSRGVDPAVIEARLIDAWT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QQREPAQSEAAPAPPTTRVAEARQSNERPAEPPRAEQPRSEPASPEVAPVRRPAAPDLEA
HHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RAEARQGKSPDPAPAPAQPAPGAAAAPVPAPAANEASEASEASEASEARRSVAPLEVTSA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHH
VDLTYYSARELDVQPRALREIVPDYPPLADRSRISGTVRLQVELEADGRVRDVSVVSADP
EEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCEEEEEEEEECCCCCEEEEEEEECCC
PGVFDDSARAAFREARFAPAQRQGRPVRSRVLIEVVYDWEGRN
CCCCCCHHHHHHHHHHCCCHHHCCCCHHHEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA