Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is bfr [C]

Identifier: 74318251

GI number: 74318251

Start: 2312526

End: 2313104

Strand: Reverse

Name: bfr [C]

Synonym: Tbd_2233

Alternate gene names: 74318251

Gene position: 2313104-2312526 (Counterclockwise)

Preceding gene: 74318252

Following gene: 74318248

Centisome position: 79.49

GC content: 66.67

Gene sequence:

>579_bases
ATGAATGACACCGCGCGCCCGGCGGCGGGTACCGGCAAGGCGGAAGGGAGCACGGCCGCAGGCGGATTTCTGACCGACGT
CGCGACGCTGCGGGCGCGCGCCCGCCAGCACATCGAAGCGGGCGCGGTGACCGGGGACTACGGCCTCAAGGCCGAGGCCG
CGGTCGGGTTGCTCAACGCCGCCCTGGCGACCGAACTCGTCTGCACGCTGCGGTATCGCCAGCATGCGTTCGTCGCCAAG
GGCATCAATTCCGAGCCGATCGCGCAGGAGTTTCTCGTCCACTCGAACGAGGAACTTGCCCACGCCGACCTGCTCGCCAA
GCGCATCGTGCAACTCGGCGGTGCGCCCGAATTCAATCCGGAGTGCCTGACCTCGCTGTCCCACGCCGAATACGTGACGA
GCGCGTCGCTCGAGGACATGATTCGCGAAAACCTGGTCGCGGAACGGATCGCGATCGAGAGCTACCGCGAAATGGTGCGT
TATTTCGGCGAGCACGATCCGACGACGCGCGCCATGCTCGAAGGCATCCTCGCGATGGAGGAGGACCACGCCGACGAGCT
GGCGGACTTGCTGCACTGA

Upstream 100 bases:

>100_bases
CAAGGATATCGAGAGCGGTGGCGAAAAGATTCAGGACGCCGCTGACCGCGACAAGTAATCCGCAAACGCTGTCCGTTCAT
TTCAACCCGAGGAGCAACTC

Downstream 100 bases:

>100_bases
GTCCGCGCAGTCGCGCGATCCGGCCGGCGTTGTCGTTCCGAGCCGGTTAGCGCCGCAGCTCGGCTGCGGTCTCGATTGCC
GTACGCGGCAGCAATACCCA

Product: putative bacterioferritin

Products: NA

Alternate protein names: Bacterioferritin; Ferritin And Dps; Ferritin-Like Domain Subfamily; Bacterioferritin-Like Domain-Containing Protein; Rubrerythrin Family Protein; RubrerythrinFerritin And Dps

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK
GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR
YFGEHDPTTRAMLEGILAMEEDHADELADLLH

Sequences:

>Translated_192_residues
MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK
GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR
YFGEHDPTTRAMLEGILAMEEDHADELADLLH
>Mature_192_residues
MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK
GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR
YFGEHDPTTRAMLEGILAMEEDHADELADLLH

Specific function: May Perform Analogous Functions In Iron Detoxification And Storage To That Of Animal Ferritins. [C]

COG id: COG2193

COG function: function code P; Bacterioferritin (cytochrome b1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20716; Mature: 20716

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50905 FERRITIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ALATELVCTLRYRQHAFVAKGINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
ECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVRYFGEHDPTTRAMLEGILAME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EDHADELADLLH
HCCHHHHHHHHC
>Mature Secondary Structure
MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ALATELVCTLRYRQHAFVAKGINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
ECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVRYFGEHDPTTRAMLEGILAME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EDHADELADLLH
HCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA