| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318243
Identifier: 74318243
GI number: 74318243
Start: 2304501
End: 2305769
Strand: Reverse
Name: 74318243
Synonym: Tbd_2225
Alternate gene names: NA
Gene position: 2305769-2304501 (Counterclockwise)
Preceding gene: 74318244
Following gene: 74318242
Centisome position: 79.24
GC content: 63.2
Gene sequence:
>1269_bases ATGGCACACATCGTAATACTCGGCGCCGGCGTCGGCGGCATGACCATGGCGTATGAAATGCGCGAGTCGGCACGGGCCGA GGACAAGGTCACCGTCATTTCCAACAATTCGTACTTCCAGTTCACGCCGTCCAACCCCTGGGTGGGGGTGAACTGGCGCA AGCGTGACGACGTCACGCTCGAGGCCGCGCCTTACCTCAACAAGAAAAACATCGACTTCATTCCGGTCGGCGCCGCGCGC GTGCATCCCGACAGGAACCAGATCGACCTCACCGACGGCAGGACCGTCGACTATGACTTCCTCGTCATCGCGACGGGGCC CAAGCTCGCGTTCGACGAAGTCCCGGGCCTCGGCCCCGAGGGTTACACCCAGTCGGTATGCACGGTCGACCATGCCCAGG CCGCGGGCCGCGCGTGGGACGATTTTGTGAAGAACCCGGGGCCGATCGTGGTCGGCGCGGTGCAGGGGGCTTCCTGCTAC GGCCCGGCGTACGAGTACGCGATGATCATGGACACCGACCTGCGCAAGCGCAAGATTCGTGACCGCGTGCCGATGACCTA CGTCACGGCCGAGCCGTATATCGGCCATCTGGGACTGGGCGGCGTCGGCGATTCCAAGGGCATGCTCGAATCGGTCCTCC GCGAGCGCCACATCAAGTGGATCTGCAACGCCAAGGTCACCAAGGTCGAGGCTGGCAAGATGTTCGTCGCCGAGCACAAC GACAAGGGCGAAGTGATCAAGGAGCACGAACTGCCGTTCGGCTACTCGATGATGCTGCCGGCGTTCAAGGGCATCGATGC TGTGTTCGGCATCGAGGGGCTGACCAATCCGCGCGGCTTCATCACGATCGACCCCTACCAGCGCAACGCGAAGTACCCGA ACGTCTACTCCGTCGGCGTGTGCGTCGCGATCCCACCCGTCGAGGTCACTCCCGTGCCGACCGGCACGCCGAAGACCGGC TACATGATCGAATCGATGGTGACGGCGACCGCGCACAACATCCGCGCCGTGCTCGACGGCCGCGAGCCTGCCGAGAAGGC GACCTGGAACGCGATCTGCCTCGCCGACTTCGGCGACACCGGCGCCGCCTTCGTGGCCCTGCCGCAGATTCCGCCGCGCA ATGTCAACTGGTTCAAGGAAGGCAAGTGGGTGCATCTGGCCAAGGTCGCCTTCGAGAAGTACTTCATCCGCAAGATGAAA AAAGGCTCGACCGAGCCGCTGTACGAGAAGTACGTGCTCGGCCTCATGGGCATCAAGAAACTCAAGTAA
Upstream 100 bases:
>100_bases GACTTGCAGAAGATCGTTCAGGACGGCCTCGACGCCATGGTGCGCGTCTTCGAGTGGTGAGTCGCCTACCCAACCACACA GCACCCCAGGAGAACAACAC
Downstream 100 bases:
>100_bases ACAATTTCGGACTCCTGCCCCCTAAGCGCCTTCGGGCGCTTTTTTTATGGGGCGCGCTTTTTTTATGGCCGGCGGGCCGC GCAGCTATAATTTCCGGTCC
Product: sulfide-quinone reductase
Products: NA
Alternate protein names: Sulfide-Quinone Reductase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; SulfideQuinone Oxidoreductase; Sulfide Quinone Reductase; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Oxidoreductase; Sulfide-Quinone Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; Pyridine Nucleotide-Disulphide Oxidoreductase; Sulfide Dehydrogenase; Quinone Reductase; FAD Dependent Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Sulfide-Quinone Reductase Related Protein; NADH Dehydrogenase FAD-Containing Subunit; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein; SulfideQuinone Reductase; Flavoprotein Reductase; Sulfide Dehydrogenase Related Protein
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MAHIVILGAGVGGMTMAYEMRESARAEDKVTVISNNSYFQFTPSNPWVGVNWRKRDDVTLEAAPYLNKKNIDFIPVGAAR VHPDRNQIDLTDGRTVDYDFLVIATGPKLAFDEVPGLGPEGYTQSVCTVDHAQAAGRAWDDFVKNPGPIVVGAVQGASCY GPAYEYAMIMDTDLRKRKIRDRVPMTYVTAEPYIGHLGLGGVGDSKGMLESVLRERHIKWICNAKVTKVEAGKMFVAEHN DKGEVIKEHELPFGYSMMLPAFKGIDAVFGIEGLTNPRGFITIDPYQRNAKYPNVYSVGVCVAIPPVEVTPVPTGTPKTG YMIESMVTATAHNIRAVLDGREPAEKATWNAICLADFGDTGAAFVALPQIPPRNVNWFKEGKWVHLAKVAFEKYFIRKMK KGSTEPLYEKYVLGLMGIKKLK
Sequences:
>Translated_422_residues MAHIVILGAGVGGMTMAYEMRESARAEDKVTVISNNSYFQFTPSNPWVGVNWRKRDDVTLEAAPYLNKKNIDFIPVGAAR VHPDRNQIDLTDGRTVDYDFLVIATGPKLAFDEVPGLGPEGYTQSVCTVDHAQAAGRAWDDFVKNPGPIVVGAVQGASCY GPAYEYAMIMDTDLRKRKIRDRVPMTYVTAEPYIGHLGLGGVGDSKGMLESVLRERHIKWICNAKVTKVEAGKMFVAEHN DKGEVIKEHELPFGYSMMLPAFKGIDAVFGIEGLTNPRGFITIDPYQRNAKYPNVYSVGVCVAIPPVEVTPVPTGTPKTG YMIESMVTATAHNIRAVLDGREPAEKATWNAICLADFGDTGAAFVALPQIPPRNVNWFKEGKWVHLAKVAFEKYFIRKMK KGSTEPLYEKYVLGLMGIKKLK >Mature_421_residues AHIVILGAGVGGMTMAYEMRESARAEDKVTVISNNSYFQFTPSNPWVGVNWRKRDDVTLEAAPYLNKKNIDFIPVGAARV HPDRNQIDLTDGRTVDYDFLVIATGPKLAFDEVPGLGPEGYTQSVCTVDHAQAAGRAWDDFVKNPGPIVVGAVQGASCYG PAYEYAMIMDTDLRKRKIRDRVPMTYVTAEPYIGHLGLGGVGDSKGMLESVLRERHIKWICNAKVTKVEAGKMFVAEHND KGEVIKEHELPFGYSMMLPAFKGIDAVFGIEGLTNPRGFITIDPYQRNAKYPNVYSVGVCVAIPPVEVTPVPTGTPKTGY MIESMVTATAHNIRAVLDGREPAEKATWNAICLADFGDTGAAFVALPQIPPRNVNWFKEGKWVHLAKVAFEKYFIRKMKK GSTEPLYEKYVLGLMGIKKLK
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI10864011, Length=374, Percent_Identity=22.7272727272727, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115534373, Length=300, Percent_Identity=25, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24657386, Length=329, Percent_Identity=23.4042553191489, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24657391, Length=329, Percent_Identity=23.4042553191489, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46567; Mature: 46436
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHIVILGAGVGGMTMAYEMRESARAEDKVTVISNNSYFQFTPSNPWVGVNWRKRDDVTL CEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCEEECCCCCCCCEEE EAAPYLNKKNIDFIPVGAARVHPDRNQIDLTDGRTVDYDFLVIATGPKLAFDEVPGLGPE EECCCCCCCCCCEEECCCEEECCCCCEEECCCCCEEEEEEEEEECCCCEEHHCCCCCCCC GYTQSVCTVDHAQAAGRAWDDFVKNPGPIVVGAVQGASCYGPAYEYAMIMDTDLRKRKIR CCCCCEEEEHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHH DRVPMTYVTAEPYIGHLGLGGVGDSKGMLESVLRERHIKWICNAKVTKVEAGKMFVAEHN HCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCEEEEEECC DKGEVIKEHELPFGYSMMLPAFKGIDAVFGIEGLTNPRGFITIDPYQRNAKYPNVYSVGV CCCCEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEEEECCHHCCCCCCCEEEEEE CVAIPPVEVTPVPTGTPKTGYMIESMVTATAHNIRAVLDGREPAEKATWNAICLADFGDT EEEECCEEEECCCCCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEECCCC GAAFVALPQIPPRNVNWFKEGKWVHLAKVAFEKYFIRKMKKGSTEPLYEKYVLGLMGIKK CEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LK CC >Mature Secondary Structure AHIVILGAGVGGMTMAYEMRESARAEDKVTVISNNSYFQFTPSNPWVGVNWRKRDDVTL EEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCEEECCCCCCCCEEE EAAPYLNKKNIDFIPVGAARVHPDRNQIDLTDGRTVDYDFLVIATGPKLAFDEVPGLGPE EECCCCCCCCCCEEECCCEEECCCCCEEECCCCCEEEEEEEEEECCCCEEHHCCCCCCCC GYTQSVCTVDHAQAAGRAWDDFVKNPGPIVVGAVQGASCYGPAYEYAMIMDTDLRKRKIR CCCCCEEEEHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHH DRVPMTYVTAEPYIGHLGLGGVGDSKGMLESVLRERHIKWICNAKVTKVEAGKMFVAEHN HCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCEEEEEECC DKGEVIKEHELPFGYSMMLPAFKGIDAVFGIEGLTNPRGFITIDPYQRNAKYPNVYSVGV CCCCEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEEEECCHHCCCCCCCEEEEEE CVAIPPVEVTPVPTGTPKTGYMIESMVTATAHNIRAVLDGREPAEKATWNAICLADFGDT EEEECCEEEECCCCCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEECCCC GAAFVALPQIPPRNVNWFKEGKWVHLAKVAFEKYFIRKMKKGSTEPLYEKYVLGLMGIKK CEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA