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The map label for this gene is pal [H]

Identifier: 74318223

GI number: 74318223

Start: 2285249

End: 2285815

Strand: Reverse

Name: pal [H]

Synonym: Tbd_2205

Alternate gene names: 74318223

Gene position: 2285815-2285249 (Counterclockwise)

Preceding gene: 74318224

Following gene: 74318222

Centisome position: 78.56

GC content: 65.61

Gene sequence:

>567_bases
ATGAAGAAGATTGCTATCCCCGTCCTGCTGGCCCTGGTCCTGTCCGCATGTGGCACCACCGGCAGCAAGGACGCGACCGT
CGAAGATCGTACCGGCGGCTCGAGTGTCACGACGGTCGACAAGGTTGGGGCCGGCGCCGAGAGCACCGGCGTTGACGGCG
CAGGCGTCGAGGGGAGCGCGCTGCCGGGCGATCAGGCCGCGGGCGATCCGCGCAAGGAGCCGGCCAACGCCTTGTCCAAG
CGCAGCGTCTTTTTCGATTTCGACAGCTTTGTCGTCAAGGATGAATACCGCCCGGTCCTCGAAGCACACGCCGGTTACCT
CGCGTCGAAGCGCGACGCACGCATCACGCTGCAGGGCAACGCCGACGAGCGGGGCAGCCGCGAATACAACCTCGCCCTGG
GACAGAAGCGCGCCGAAGCGGTGCGCAAGGCGCTGGCCGTGCTCGGCGTGAGCGACGCGCAGATGGAAGCGATCAGCTTC
GGTGAGGAAAAGCCGCGCAACGAGGCCGATACGGAAGAGGCCTACGCCGAAAATCGCCGTACCGACATCGTCTATGGCGA
CGAATAA

Upstream 100 bases:

>100_bases
GGGGGCCGTAGGTGTTGGCTTGAGTTTGGGAGGGTTGGGCAGCCATCCGCTTGCGGAAGCTGAACTGCCCATACATTGTT
TTCATTAAAAGGAGAGATCC

Downstream 100 bases:

>100_bases
GGGGCGCCTGCGCTTCTCCGGCGTTTTCCTCGCGTCGGCCGTCGCGCTGGCGACGCCGGCGTCCGCGGCCCTGTTCGGCG
ACAGCGAACTCGCGCGCCAG

Product: outer membrane protein, porin-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKKIAIPVLLALVLSACGTTGSKDATVEDRTGGSSVTTVDKVGAGAESTGVDGAGVEGSALPGDQAAGDPRKEPANALSK
RSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGNADERGSREYNLALGQKRAEAVRKALAVLGVSDAQMEAISF
GEEKPRNEADTEEAYAENRRTDIVYGDE

Sequences:

>Translated_188_residues
MKKIAIPVLLALVLSACGTTGSKDATVEDRTGGSSVTTVDKVGAGAESTGVDGAGVEGSALPGDQAAGDPRKEPANALSK
RSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGNADERGSREYNLALGQKRAEAVRKALAVLGVSDAQMEAISF
GEEKPRNEADTEEAYAENRRTDIVYGDE
>Mature_188_residues
MKKIAIPVLLALVLSACGTTGSKDATVEDRTGGSSVTTVDKVGAGAESTGVDGAGVEGSALPGDQAAGDPRKEPANALSK
RSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGNADERGSREYNLALGQKRAEAVRKALAVLGVSDAQMEAISF
GEEKPRNEADTEEAYAENRRTDIVYGDE

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=182, Percent_Identity=35.1648351648352, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19869; Mature: 19869

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIAIPVLLALVLSACGTTGSKDATVEDRTGGSSVTTVDKVGAGAESTGVDGAGVEGSA
CCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCC
LPGDQAAGDPRKEPANALSKRSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGN
CCCCCCCCCCCCCHHHHHHHCCEEEECCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECC
ADERGSREYNLALGQKRAEAVRKALAVLGVSDAQMEAISFGEEKPRNEADTEEAYAENRR
CCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
TDIVYGDE
CCEEECCC
>Mature Secondary Structure
MKKIAIPVLLALVLSACGTTGSKDATVEDRTGGSSVTTVDKVGAGAESTGVDGAGVEGSA
CCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCC
LPGDQAAGDPRKEPANALSKRSVFFDFDSFVVKDEYRPVLEAHAGYLASKRDARITLQGN
CCCCCCCCCCCCCHHHHHHHCCEEEECCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECC
ADERGSREYNLALGQKRAEAVRKALAVLGVSDAQMEAISFGEEKPRNEADTEEAYAENRR
CCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
TDIVYGDE
CCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]