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The map label for this gene is ybgF [H]

Identifier: 74318222

GI number: 74318222

Start: 2284465

End: 2285262

Strand: Reverse

Name: ybgF [H]

Synonym: Tbd_2204

Alternate gene names: 74318222

Gene position: 2285262-2284465 (Counterclockwise)

Preceding gene: 74318223

Following gene: 74318221

Centisome position: 78.54

GC content: 67.79

Gene sequence:

>798_bases
ATGGCGACGAATAAGGGGCGCCTGCGCTTCTCCGGCGTTTTCCTCGCGTCGGCCGTCGCGCTGGCGACGCCGGCGTCCGC
GGCCCTGTTCGGCGACAGCGAACTCGCGCGCCAGACCCAGGCGCTGCAGCAACGGGTCGAGGCGCTCGACGCCCGTCTGG
CCAAGCTCGAGACCGCGATGCAGCAGAACTCGAAGCTGCTCGACGTGCAGCAGGAAGTCGAGCGTCTCAAGGCCGAAGTC
GCCCGGCTGCGCGGTCAGGCCGAAGTTCAGGTACACCAGCTCGACACGCTGGCGAAGCGGCAAAGCGATCTCTACGCCGA
CCTTGACCAGCGCGTCGGTGAGATGGCGAAGGCGGCAGCGCCGGCCGCAGCCGCAAGCACTGCAGCGCCCGGCGACGCGG
CGTCGGCCGCTGCGCCCGACGCCGTCTCCGAATCGCGCGCCTACGAGGCTGCGCTGGGCCAGTTCCGCCAAGGCAAATAC
GAAGACGCGATCGCGAGCTTCAAGGGTTTCCTGAAGACGTATCCGGCCAGCACGCTCGCGGCCAACGCGCAATACTGGGT
CGGTTACGCCTATTACGCGCTGAAGGACTACAAGGCGGCGCTCGCGCAACAGCAGAAGCTCGTTGCGGCGTATCCCGCGA
GCCCGAAAGTGCCGGACGCGCTGCTCAATATGGCGACCAGCCAGATCGCGCTGGACGACATGGCCGGTGCCCGCAAGACG
CTCGAGCAGATCGTCGCGAAGCATCCAGGCACGAATGCCGCGGCCCTCGCCGAACGCCGGCTGGCCGTCCTTAAATAG

Upstream 100 bases:

>100_bases
GACGCGCAGATGGAAGCGATCAGCTTCGGTGAGGAAAAGCCGCGCAACGAGGCCGATACGGAAGAGGCCTACGCCGAAAA
TCGCCGTACCGACATCGTCT

Downstream 100 bases:

>100_bases
ACTCCTCCGCAGCGTCTTCGCGGCGCTGCGCCCGATACGCCCGCCGTGCTCGCTCCGCCCACGCTTCGCATCACCGAGAT
CTTCCTTTCGCTCCAGGGCG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MATNKGRLRFSGVFLASAVALATPASAALFGDSELARQTQALQQRVEALDARLAKLETAMQQNSKLLDVQQEVERLKAEV
ARLRGQAEVQVHQLDTLAKRQSDLYADLDQRVGEMAKAAAPAAAASTAAPGDAASAAAPDAVSESRAYEAALGQFRQGKY
EDAIASFKGFLKTYPASTLAANAQYWVGYAYYALKDYKAALAQQQKLVAAYPASPKVPDALLNMATSQIALDDMAGARKT
LEQIVAKHPGTNAAALAERRLAVLK

Sequences:

>Translated_265_residues
MATNKGRLRFSGVFLASAVALATPASAALFGDSELARQTQALQQRVEALDARLAKLETAMQQNSKLLDVQQEVERLKAEV
ARLRGQAEVQVHQLDTLAKRQSDLYADLDQRVGEMAKAAAPAAAASTAAPGDAASAAAPDAVSESRAYEAALGQFRQGKY
EDAIASFKGFLKTYPASTLAANAQYWVGYAYYALKDYKAALAQQQKLVAAYPASPKVPDALLNMATSQIALDDMAGARKT
LEQIVAKHPGTNAAALAERRLAVLK
>Mature_264_residues
ATNKGRLRFSGVFLASAVALATPASAALFGDSELARQTQALQQRVEALDARLAKLETAMQQNSKLLDVQQEVERLKAEVA
RLRGQAEVQVHQLDTLAKRQSDLYADLDQRVGEMAKAAAPAAAASTAAPGDAASAAAPDAVSESRAYEAALGQFRQGKYE
DAIASFKGFLKTYPASTLAANAQYWVGYAYYALKDYKAALAQQQKLVAAYPASPKVPDALLNMATSQIALDDMAGARKTL
EQIVAKHPGTNAAALAERRLAVLK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=197, Percent_Identity=30.9644670050761, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28183; Mature: 28052

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNKGRLRFSGVFLASAVALATPASAALFGDSELARQTQALQQRVEALDARLAKLETAM
CCCCCCCEEEHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQNSKLLDVQQEVERLKAEVARLRGQAEVQVHQLDTLAKRQSDLYADLDQRVGEMAKAAA
HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAAAASTAAPGDAASAAAPDAVSESRAYEAALGQFRQGKYEDAIASFKGFLKTYPASTLA
CHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH
ANAQYWVGYAYYALKDYKAALAQQQKLVAAYPASPKVPDALLNMATSQIALDDMAGARKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEQIVAKHPGTNAAALAERRLAVLK
HHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATNKGRLRFSGVFLASAVALATPASAALFGDSELARQTQALQQRVEALDARLAKLETAM
CCCCCCEEEHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQNSKLLDVQQEVERLKAEVARLRGQAEVQVHQLDTLAKRQSDLYADLDQRVGEMAKAAA
HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAAAASTAAPGDAASAAAPDAVSESRAYEAALGQFRQGKYEDAIASFKGFLKTYPASTLA
CHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH
ANAQYWVGYAYYALKDYKAALAQQQKLVAAYPASPKVPDALLNMATSQIALDDMAGARKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEQIVAKHPGTNAAALAERRLAVLK
HHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]