| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is pgm [H]
Identifier: 74318156
GI number: 74318156
Start: 2223562
End: 2224935
Strand: Direct
Name: pgm [H]
Synonym: Tbd_2138
Alternate gene names: 74318156
Gene position: 2223562-2224935 (Clockwise)
Preceding gene: 74318155
Following gene: 74318157
Centisome position: 76.42
GC content: 64.85
Gene sequence:
>1374_bases GTGGAATACCCCAAGGAAATCTTCAAGGCCTACGACATTCGCGGCATCGTCGGCAAGACCTTCACGCCTGAAATCGTCGA GGCCATCGGTCATGCCATCGGCTCGGAAGCCGCCGCCCGCGGCCAGAAGGAAATCTGCATCGGCCGCGACGGCCGTCTCT CGGGGCCCGATCTCGCCGCTGCGCTGGCGCGCGGCATCCGCAAGGCCGGCATCGGCGTGGTCGACCTCGGCATGGTCGCG ACGCCGATGACTTACTTCGCCGCCTACCAGCTCGGCACGAACAGCGCAGTAATGGTCACCGGCAGCCATAATCCGCCCGA CTACAACGGCCTGAAAATGGTGCTCGGCGGCGAGACGCTCTCCGGCGCCACGATCCAGGCGCTGCGCCAGCGCCTCGTCG ACGGCAATCTTGCCCACGGCGAAGGCGGCTACCGCGAGCATGACATCGCGGGCGAGTATCTCGCGCGCATCGTCTCCGAC GTCAAGCTCGCGCGTCCGATGAAGATCATCGTCGACTGCGGCAACGGCGTGCCCGGCGCGTTCGTGCCCAAGCTCTACCG CGACATGGGATGCGAGGTCGAGGAACTCTTCTGCGAGGTCGACGGCAACTTCCCCAATCACCACCCCGACCCTTCTCAGC CGAAAAACCTGCAGGACCTGATTTCTGCACTGAAGACGAGCGACGCCGAGATCGGCCTCGCCTTCGACGGCGACGGCGAC CGCCTTGGCGTCGTCACCAAGGACGGCAGCATCATCTTCCCCGACCGCCAGCTGATGCTGTTCGCCGACGACGTGCTGAG CCGCAATCCAGGCGCCGAAATCATTTTCGACGTGAAATCGACGCGCAAGCTGTTCGACTGGATCCGCGCGCGCGGCGGCA AACCCACGCTGTGGAAAACCGGCCACAGCTTCATCAAGGCCAAGATGAAGGAGACCGGCGCGCTGCTCGCCGGCGAAATG TCGGGCCACGTGTTCTTCAAGGAACGCTGGTTCGGCTTCGACGACGGCCTCTATGCCGGGGCACGCCTGCTCGAATACCT GTCGAAGCAGGCCGACATCAACGCCACGCTGCACGGCCTGCCCGACACCGTGAACACGCCCGAACTCAACATCAAGATGG CCGAGGGCGAGCACTACGCGCTGATGGAGCGGCTGCAGAAAACCGCGAAATTCCCCGACGCGCAGGAAGTCATCACGCTC GACGGCCTGCGCGTCGAATACGCCGACGGCTTCGGCCTCGCCCGCCCGTCCAACACCACGCCGGTCGTCGTGCTGCGCTT CGAAGCCGACAATACCCAGGCACTCGAGCGCATACAGGCCGACTTCCGGCGCGTCATCCACGAGGCCGCACCGTCGCTCA GCCTTCCGTTTTGA
Upstream 100 bases:
>100_bases CCCTTCCCAGGCCGGCTCGGCTGGCTCACGCGTCGCCTGATGCGGCACTTCGAAGCAGGGCGCGGTTAGAATCGATCCCT CTGAGATCAAGGAGCGCGCT
Downstream 100 bases:
>100_bases GCGCGAACGACAGGCCGCGCAGCCTCCACGTCATCGGCGGCAAGCGGCTCGGCGGCGCCGAGCGCTTTTTCGTCCGCCTG GTGAACGCGCTGGCGCGACG
Product: phosphomannomutase
Products: NA
Alternate protein names: PGM; Glucose phosphomutase [H]
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MEYPKEIFKAYDIRGIVGKTFTPEIVEAIGHAIGSEAAARGQKEICIGRDGRLSGPDLAAALARGIRKAGIGVVDLGMVA TPMTYFAAYQLGTNSAVMVTGSHNPPDYNGLKMVLGGETLSGATIQALRQRLVDGNLAHGEGGYREHDIAGEYLARIVSD VKLARPMKIIVDCGNGVPGAFVPKLYRDMGCEVEELFCEVDGNFPNHHPDPSQPKNLQDLISALKTSDAEIGLAFDGDGD RLGVVTKDGSIIFPDRQLMLFADDVLSRNPGAEIIFDVKSTRKLFDWIRARGGKPTLWKTGHSFIKAKMKETGALLAGEM SGHVFFKERWFGFDDGLYAGARLLEYLSKQADINATLHGLPDTVNTPELNIKMAEGEHYALMERLQKTAKFPDAQEVITL DGLRVEYADGFGLARPSNTTPVVVLRFEADNTQALERIQADFRRVIHEAAPSLSLPF
Sequences:
>Translated_457_residues MEYPKEIFKAYDIRGIVGKTFTPEIVEAIGHAIGSEAAARGQKEICIGRDGRLSGPDLAAALARGIRKAGIGVVDLGMVA TPMTYFAAYQLGTNSAVMVTGSHNPPDYNGLKMVLGGETLSGATIQALRQRLVDGNLAHGEGGYREHDIAGEYLARIVSD VKLARPMKIIVDCGNGVPGAFVPKLYRDMGCEVEELFCEVDGNFPNHHPDPSQPKNLQDLISALKTSDAEIGLAFDGDGD RLGVVTKDGSIIFPDRQLMLFADDVLSRNPGAEIIFDVKSTRKLFDWIRARGGKPTLWKTGHSFIKAKMKETGALLAGEM SGHVFFKERWFGFDDGLYAGARLLEYLSKQADINATLHGLPDTVNTPELNIKMAEGEHYALMERLQKTAKFPDAQEVITL DGLRVEYADGFGLARPSNTTPVVVLRFEADNTQALERIQADFRRVIHEAAPSLSLPF >Mature_457_residues MEYPKEIFKAYDIRGIVGKTFTPEIVEAIGHAIGSEAAARGQKEICIGRDGRLSGPDLAAALARGIRKAGIGVVDLGMVA TPMTYFAAYQLGTNSAVMVTGSHNPPDYNGLKMVLGGETLSGATIQALRQRLVDGNLAHGEGGYREHDIAGEYLARIVSD VKLARPMKIIVDCGNGVPGAFVPKLYRDMGCEVEELFCEVDGNFPNHHPDPSQPKNLQDLISALKTSDAEIGLAFDGDGD RLGVVTKDGSIIFPDRQLMLFADDVLSRNPGAEIIFDVKSTRKLFDWIRARGGKPTLWKTGHSFIKAKMKETGALLAGEM SGHVFFKERWFGFDDGLYAGARLLEYLSKQADINATLHGLPDTVNTPELNIKMAEGEHYALMERLQKTAKFPDAQEVITL DGLRVEYADGFGLARPSNTTPVVVLRFEADNTQALERIQADFRRVIHEAAPSLSLPF
Specific function: This enzyme participates in both the breakdown and synthesis of glucose [H]
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1788361, Length=441, Percent_Identity=34.2403628117914, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1789566, Length=371, Percent_Identity=29.9191374663073, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 49820; Mature: 49820
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYPKEIFKAYDIRGIVGKTFTPEIVEAIGHAIGSEAAARGQKEICIGRDGRLSGPDLAA CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCHHHHH ALARGIRKAGIGVVDLGMVATPMTYFAAYQLGTNSAVMVTGSHNPPDYNGLKMVLGGETL HHHHHHHHHCCCEEEHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCEEEEECCCCC SGATIQALRQRLVDGNLAHGEGGYREHDIAGEYLARIVSDVKLARPMKIIVDCGNGVPGA CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH FVPKLYRDMGCEVEELFCEVDGNFPNHHPDPSQPKNLQDLISALKTSDAEIGLAFDGDGD HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC RLGVVTKDGSIIFPDRQLMLFADDVLSRNPGAEIIFDVKSTRKLFDWIRARGGKPTLWKT EEEEEECCCCEECCCCEEEEEEHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEECC GHSFIKAKMKETGALLAGEMSGHVFFKERWFGFDDGLYAGARLLEYLSKQADINATLHGL CHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCC PDTVNTPELNIKMAEGEHYALMERLQKTAKFPDAQEVITLDGLRVEYADGFGLARPSNTT CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHEEEECCEEEEECCCCCCCCCCCCC PVVVLRFEADNTQALERIQADFRRVIHEAAPSLSLPF CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MEYPKEIFKAYDIRGIVGKTFTPEIVEAIGHAIGSEAAARGQKEICIGRDGRLSGPDLAA CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCHHHHH ALARGIRKAGIGVVDLGMVATPMTYFAAYQLGTNSAVMVTGSHNPPDYNGLKMVLGGETL HHHHHHHHHCCCEEEHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCEEEEECCCCC SGATIQALRQRLVDGNLAHGEGGYREHDIAGEYLARIVSDVKLARPMKIIVDCGNGVPGA CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH FVPKLYRDMGCEVEELFCEVDGNFPNHHPDPSQPKNLQDLISALKTSDAEIGLAFDGDGD HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC RLGVVTKDGSIIFPDRQLMLFADDVLSRNPGAEIIFDVKSTRKLFDWIRARGGKPTLWKT EEEEEECCCCEECCCCEEEEEEHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEECC GHSFIKAKMKETGALLAGEMSGHVFFKERWFGFDDGLYAGARLLEYLSKQADINATLHGL CHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCC PDTVNTPELNIKMAEGEHYALMERLQKTAKFPDAQEVITLDGLRVEYADGFGLARPSNTT CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHEEEECCEEEEECCCCCCCCCCCCC PVVVLRFEADNTQALERIQADFRRVIHEAAPSLSLPF CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8157643; 8188595 [H]