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The map label for this gene is recO

Identifier: 74318102

GI number: 74318102

Start: 2177088

End: 2177858

Strand: Reverse

Name: recO

Synonym: Tbd_2084

Alternate gene names: 74318102

Gene position: 2177858-2177088 (Counterclockwise)

Preceding gene: 74318103

Following gene: 74318101

Centisome position: 74.85

GC content: 70.17

Gene sequence:

>771_bases
ATGCCCGCCTCGCGGTCCCTAGGCATGTCGAGCGACGCCCGCGTTAACAACGAATCCGGCTTCATCCTCCACACTTACCC
GTTCAAGGAAACCAGCGTGGTGGCCGAAGTCTTCACCCGCGCCCACGGCCGCGTCGCGCTGATCGCGCGCGGCGCGCGGC
GCCCGGCCTCCGCCTTGCGCGGCCTCATGCAGCCGTTCAGCCCGCTGCTCCTGTCCTGGTTCGGCAAGGCCGACCTCAAG
ACGCTGCATGCGGCCGAGTGGCAGGGCGGGCTCGTCGCGCCGCAGGGGCGCGCGCTGATGTGCGGGTTCTACCTCAACGA
ACTGCTACTGCGTCTGCTCGCGCGCGGCGACGCCCACGAGCGGCTGTACGACCGCTACGTCGAAACCCTCGACCAGCTCG
CGCGCAGTGCCGCGGCGAGCGACGCCGAACGCGCGACTGCCTTCGAGCGCATCCTGCGCCGCTTCGAGAAAAACCTGTTG
TCGGAAATCGGCTACGGCGCGACCTTCGACGTCGAGGCCGGCGGCGCGGCGATCGAGCCCGGCGCCGCCTACGTGTTCCA
GCCCGAACGCGGCGCCCTGCGCGCGGCCGGCCAGCCGGGCTGCCCGGTGTCGGGGCAGACCCTGCTCGACCTCGCGGGCG
ACAGCTTCGAGCGGCTGGCGACCCTGGGCGAGGCGAAGGCGCTCATGCGCGCGCTCATCAACCATACCCTTGGCACCAAG
CCGCTTTATACTCGCCAGCTCCTGCGCGAACTCACCGAGCTGAATCCATGA

Upstream 100 bases:

>100_bases
TGGGCCGACGACCTGCGCACGCTGAAATCGCTCGGCCTGGATTGACTATTTTTCCCGGGCGCAGGCACGAAGGTGCACGG
AAAGAGTCGAATCGCAATCG

Downstream 100 bases:

>100_bases
TGCCCTCGCCCTTGTCCCACACGCTTTCCGGGCCTCACCGCATTGCGCCGACCTTCGTTTCGCGCGTCTCGCGTCGCGCA
CGGCTCGCATGGGCGGTGCA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPASRSLGMSSDARVNNESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALRGLMQPFSPLLLSWFGKADLK
TLHAAEWQGGLVAPQGRALMCGFYLNELLLRLLARGDAHERLYDRYVETLDQLARSAAASDAERATAFERILRRFEKNLL
SEIGYGATFDVEAGGAAIEPGAAYVFQPERGALRAAGQPGCPVSGQTLLDLAGDSFERLATLGEAKALMRALINHTLGTK
PLYTRQLLRELTELNP

Sequences:

>Translated_256_residues
MPASRSLGMSSDARVNNESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALRGLMQPFSPLLLSWFGKADLK
TLHAAEWQGGLVAPQGRALMCGFYLNELLLRLLARGDAHERLYDRYVETLDQLARSAAASDAERATAFERILRRFEKNLL
SEIGYGATFDVEAGGAAIEPGAAYVFQPERGALRAAGQPGCPVSGQTLLDLAGDSFERLATLGEAKALMRALINHTLGTK
PLYTRQLLRELTELNP
>Mature_255_residues
PASRSLGMSSDARVNNESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALRGLMQPFSPLLLSWFGKADLKT
LHAAEWQGGLVAPQGRALMCGFYLNELLLRLLARGDAHERLYDRYVETLDQLARSAAASDAERATAFERILRRFEKNLLS
EIGYGATFDVEAGGAAIEPGAAYVFQPERGALRAAGQPGCPVSGQTLLDLAGDSFERLATLGEAKALMRALINHTLGTKP
LYTRQLLRELTELNP

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=235, Percent_Identity=35.3191489361702, Blast_Score=127, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_THIDA (Q3SH52)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315842.1
- ProteinModelPortal:   Q3SH52
- STRING:   Q3SH52
- GeneID:   3672256
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2084
- NMPDR:   fig|292415.3.peg.2239
- eggNOG:   COG1381
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- PhylomeDB:   Q3SH52
- ProtClustDB:   PRK00085
- BioCyc:   TDEN292415:TBD_2084-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27898; Mature: 27767

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASRSLGMSSDARVNNESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALR
CCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
GLMQPFSPLLLSWFGKADLKTLHAAEWQGGLVAPQGRALMCGFYLNELLLRLLARGDAHE
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCEEHHHHHHHHHHHHHHHCCCHHH
RLYDRYVETLDQLARSAAASDAERATAFERILRRFEKNLLSEIGYGATFDVEAGGAAIEP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEECC
GAAYVFQPERGALRAAGQPGCPVSGQTLLDLAGDSFERLATLGEAKALMRALINHTLGTK
CCEEEECCCCCCHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PLYTRQLLRELTELNP
CHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PASRSLGMSSDARVNNESGFILHTYPFKETSVVAEVFTRAHGRVALIARGARRPASALR
CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
GLMQPFSPLLLSWFGKADLKTLHAAEWQGGLVAPQGRALMCGFYLNELLLRLLARGDAHE
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCEEHHHHHHHHHHHHHHHCCCHHH
RLYDRYVETLDQLARSAAASDAERATAFERILRRFEKNLLSEIGYGATFDVEAGGAAIEP
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEECC
GAAYVFQPERGALRAAGQPGCPVSGQTLLDLAGDSFERLATLGEAKALMRALINHTLGTK
CCEEEECCCCCCHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PLYTRQLLRELTELNP
CHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA