| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is dhfrIII [H]
Identifier: 74318057
GI number: 74318057
Start: 2128195
End: 2128698
Strand: Reverse
Name: dhfrIII [H]
Synonym: Tbd_2039
Alternate gene names: 74318057
Gene position: 2128698-2128195 (Counterclockwise)
Preceding gene: 74318058
Following gene: 74318056
Centisome position: 73.16
GC content: 68.45
Gene sequence:
>504_bases ATGAGCGGGACGGGGCAGCCGCGCGTGAGCGTCATCGCCGCGCTGGCAAAGAATCGCGTCATCGGCATCGAGAACCGGCT GCCGTGGCGTCTGCCCGAAGACCTCGCCCACTTCAAGGCGCTGACGCTCGACCATCCCGTCCTGATGGGGCGCAAGACCT TCGAGTCGCTCGGGCGGCCCTTGCCGCGGCGCACCAACGTCGTCATCACCCGCAACGCCGACTACCGGCCCGACGGCTGC CTCGTCGCGGCGTCGATGCCGGCGGCGATCGCGCTATGCCAGGGCGCCGACGAAATCTTCTTCATCGGCGGCGCCGAGCT CTATGCGCAGGCGATTCCGCTCGCCGATCGCCTGTATCTGACCGAAGTCGACGCCGAGCCCGAGGGCGATGCCTGGTTTC CCGAGTTCGACCGGGCGGCGTTCCGCGAAATCTCGCGCGCCTCGCACGTGGGCGAGAAAGGCGACGTGCTGCGCTTCGAC TTCGTCGTGTACGAACGCCGCTGA
Upstream 100 bases:
>100_bases CGCTCAATCCCGACGTGACCGACATCTTCGGCTTTCGCTTCGAGGATTTCACGCTCGGCGGCTACGACCCGCACCCGGCG ATCAAGGCGCCGGTCGCGGT
Downstream 100 bases:
>100_bases CGGCCGAGGGGCGGAACACGGGCAGCCCCCCGCTGCGCTTGCGCCAAGCCGCTTTGACAGGCCGCGTCGCATCGACTAGA AAAACATACAAGGCCCGGCG
Product: dihydrofolate reductase
Products: NA
Alternate protein names: Dihydrofolate reductase type III [H]
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSGTGQPRVSVIAALAKNRVIGIENRLPWRLPEDLAHFKALTLDHPVLMGRKTFESLGRPLPRRTNVVITRNADYRPDGC LVAASMPAAIALCQGADEIFFIGGAELYAQAIPLADRLYLTEVDAEPEGDAWFPEFDRAAFREISRASHVGEKGDVLRFD FVVYERR
Sequences:
>Translated_167_residues MSGTGQPRVSVIAALAKNRVIGIENRLPWRLPEDLAHFKALTLDHPVLMGRKTFESLGRPLPRRTNVVITRNADYRPDGC LVAASMPAAIALCQGADEIFFIGGAELYAQAIPLADRLYLTEVDAEPEGDAWFPEFDRAAFREISRASHVGEKGDVLRFD FVVYERR >Mature_166_residues SGTGQPRVSVIAALAKNRVIGIENRLPWRLPEDLAHFKALTLDHPVLMGRKTFESLGRPLPRRTNVVITRNADYRPDGCL VAASMPAAIALCQGADEIFFIGGAELYAQAIPLADRLYLTEVDAEPEGDAWFPEFDRAAFREISRASHVGEKGDVLRFDF VVYERR
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Escherichia coli, GI1786233, Length=159, Percent_Identity=44.0251572327044, Blast_Score=135, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17505899, Length=182, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324810, Length=213, Percent_Identity=29.5774647887324, Blast_Score=75, Evalue=5e-15, Organism=Drosophila melanogaster, GI116008026, Length=179, Percent_Identity=29.0502793296089, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24647458, Length=179, Percent_Identity=29.0502793296089, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 18596; Mature: 18465
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00075 DHFR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTGQPRVSVIAALAKNRVIGIENRLPWRLPEDLAHFKALTLDHPVLMGRKTFESLGRP CCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHCHHHHHHHCCC LPRRTNVVITRNADYRPDGCLVAASMPAAIALCQGADEIFFIGGAELYAQAIPLADRLYL CCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEE TEVDAEPEGDAWFPEFDRAAFREISRASHVGEKGDVLRFDFVVYERR EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC >Mature Secondary Structure SGTGQPRVSVIAALAKNRVIGIENRLPWRLPEDLAHFKALTLDHPVLMGRKTFESLGRP CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHCHHHHHHHCCC LPRRTNVVITRNADYRPDGCLVAASMPAAIALCQGADEIFFIGGAELYAQAIPLADRLYL CCCCCCEEEEECCCCCCCCEEEEECCCHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEE TEVDAEPEGDAWFPEFDRAAFREISRASHVGEKGDVLRFDFVVYERR EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840679; 6371010 [H]