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The map label for this gene is rnfD [H]

Identifier: 74318036

GI number: 74318036

Start: 2107917

End: 2108945

Strand: Direct

Name: rnfD [H]

Synonym: Tbd_2018

Alternate gene names: 74318036

Gene position: 2107917-2108945 (Clockwise)

Preceding gene: 74318035

Following gene: 74318037

Centisome position: 72.44

GC content: 68.71

Gene sequence:

>1029_bases
ATGCCGTCTCCTTACATCCTCGATCGCACGAGCGTCACCGTCGTCATGGCCTGGGTGCTGGCCGCCCTGCTTCCGGGCAT
CGGGGTCTACGTCTGGCTGTTCGGGCCCGGCATCCTGCTGACGCTGTCGATTGCGACCGTCACCGCCGTCGCGGCCGAGG
CCGGGATGCTCAAGGCGCGCGGCTACCCGATCAAGCCTTTCCTCGGCGATCTCTCGGCGGTCGTCACGGCCTGGCTGCTC
GCGCTCTCGCTGCCCTCGCTCGCGCCCTGGTGGCTGATCGTCACCGGGACCCTGTTCGCGATCGTCGTCGCCAAGCACCT
GTACGGCGGGCTGGGCCAGAACGTGTTCAATCCGGCGATGGTCGGCTACGCGGTGCTGATCGTGTCGTTTCCGGTCCAGA
TGACGCAGTGGGCGGGCCCGCTCGAACTGACCGCGACGCCGCTCGGGATCGGCCAGAGCGCCGCGATCATTTTCGGCGCG
GACGTGCCGAAGAGCCTGCTCGACGCCGTGACCATGGCGACGCCGCTCGACACGCTGCGGACCGGCCTGCTGCAGCAGCA
CACGGTCGACGAGGTCGTGCGGCAGCCGATTTTCGGCTACCTCGGCGGCACCGGCTTCGAATGGCTGGCCGCGGCCTTCC
TGCTCGGTGGCCTGCTGCTGTGGGCCCTGCGCATCATCAGCTGGCAGGTGCCGCTCGCTTTTCTGGTCGGCGTGTGGCTG
ACCGCCGGCTTCCTGCACTTCTTCGACGCCGGCCGCTTCGGCGCGCCCTGGTTCCATGTCTTCGCCCCGTCGGTCATGCT
CGGCGCCTTCTTCATCGCGACCGATCCGGTGTCGGGCGCGACGACGCCGCGCGGCAAGGTGGTCTTCGGTCTCGGCGCCG
GATTCCTGACCATCGTGATCCGGACCTGGGGCGGCTTCCCCGACGGTGTCGCGTTCGCCATCCTGCTCATGAACCTGTGC
GTGCCGCTGATCGATCAGTACACCCAGCCGCGCGTCTACGGTGAAGTCCGCAAGGAGCCGCGCGCGTGA

Upstream 100 bases:

>100_bases
CGCCCGACACCCGGCACGAGATCGAAGAGATCGAAGCGCGCCGCGCAAAAATTCGCGAACTGGCCCGCCAGCCGCTGGAA
TCCGAAGAGAAGAATTCCTG

Downstream 100 bases:

>100_bases
GCATGAGCGGAGCCGCCCGCAACGCGCTACGCGCGGGCACCGTACTCGTCGTCTTCGCCGTCGTCGGAACCGCGATGCTC
GCGTTCACCCACGGCCGCAC

Product: RnfABCDGE type electron transport complex subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPSPYILDRTSVTVVMAWVLAALLPGIGVYVWLFGPGILLTLSIATVTAVAAEAGMLKARGYPIKPFLGDLSAVVTAWLL
ALSLPSLAPWWLIVTGTLFAIVVAKHLYGGLGQNVFNPAMVGYAVLIVSFPVQMTQWAGPLELTATPLGIGQSAAIIFGA
DVPKSLLDAVTMATPLDTLRTGLLQQHTVDEVVRQPIFGYLGGTGFEWLAAAFLLGGLLLWALRIISWQVPLAFLVGVWL
TAGFLHFFDAGRFGAPWFHVFAPSVMLGAFFIATDPVSGATTPRGKVVFGLGAGFLTIVIRTWGGFPDGVAFAILLMNLC
VPLIDQYTQPRVYGEVRKEPRA

Sequences:

>Translated_342_residues
MPSPYILDRTSVTVVMAWVLAALLPGIGVYVWLFGPGILLTLSIATVTAVAAEAGMLKARGYPIKPFLGDLSAVVTAWLL
ALSLPSLAPWWLIVTGTLFAIVVAKHLYGGLGQNVFNPAMVGYAVLIVSFPVQMTQWAGPLELTATPLGIGQSAAIIFGA
DVPKSLLDAVTMATPLDTLRTGLLQQHTVDEVVRQPIFGYLGGTGFEWLAAAFLLGGLLLWALRIISWQVPLAFLVGVWL
TAGFLHFFDAGRFGAPWFHVFAPSVMLGAFFIATDPVSGATTPRGKVVFGLGAGFLTIVIRTWGGFPDGVAFAILLMNLC
VPLIDQYTQPRVYGEVRKEPRA
>Mature_341_residues
PSPYILDRTSVTVVMAWVLAALLPGIGVYVWLFGPGILLTLSIATVTAVAAEAGMLKARGYPIKPFLGDLSAVVTAWLLA
LSLPSLAPWWLIVTGTLFAIVVAKHLYGGLGQNVFNPAMVGYAVLIVSFPVQMTQWAGPLELTATPLGIGQSAAIIFGAD
VPKSLLDAVTMATPLDTLRTGLLQQHTVDEVVRQPIFGYLGGTGFEWLAAAFLLGGLLLWALRIISWQVPLAFLVGVWLT
AGFLHFFDAGRFGAPWFHVFAPSVMLGAFFIATDPVSGATTPRGKVVFGLGAGFLTIVIRTWGGFPDGVAFAILLMNLCV
PLIDQYTQPRVYGEVRKEPRA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=344, Percent_Identity=46.5116279069767, Blast_Score=295, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 36554; Mature: 36423

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPYILDRTSVTVVMAWVLAALLPGIGVYVWLFGPGILLTLSIATVTAVAAEAGMLKAR
CCCCCEECCHHHHHHHHHHHHHHHCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHCHHHCC
GYPIKPFLGDLSAVVTAWLLALSLPSLAPWWLIVTGTLFAIVVAKHLYGGLGQNVFNPAM
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHH
VGYAVLIVSFPVQMTQWAGPLELTATPLGIGQSAAIIFGADVPKSLLDAVTMATPLDTLR
HHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHH
TGLLQQHTVDEVVRQPIFGYLGGTGFEWLAAAFLLGGLLLWALRIISWQVPLAFLVGVWL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGFLHFFDAGRFGAPWFHVFAPSVMLGAFFIATDPVSGATTPRGKVVFGLGAGFLTIVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHH
RTWGGFPDGVAFAILLMNLCVPLIDQYTQPRVYGEVRKEPRA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
PSPYILDRTSVTVVMAWVLAALLPGIGVYVWLFGPGILLTLSIATVTAVAAEAGMLKAR
CCCCEECCHHHHHHHHHHHHHHHCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHCHHHCC
GYPIKPFLGDLSAVVTAWLLALSLPSLAPWWLIVTGTLFAIVVAKHLYGGLGQNVFNPAM
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHH
VGYAVLIVSFPVQMTQWAGPLELTATPLGIGQSAAIIFGADVPKSLLDAVTMATPLDTLR
HHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHH
TGLLQQHTVDEVVRQPIFGYLGGTGFEWLAAAFLLGGLLLWALRIISWQVPLAFLVGVWL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAGFLHFFDAGRFGAPWFHVFAPSVMLGAFFIATDPVSGATTPRGKVVFGLGAGFLTIVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHH
RTWGGFPDGVAFAILLMNLCVPLIDQYTQPRVYGEVRKEPRA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA