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The map label for this gene is rnfC [H]

Identifier: 74318035

GI number: 74318035

Start: 2106241

End: 2107917

Strand: Direct

Name: rnfC [H]

Synonym: Tbd_2017

Alternate gene names: 74318035

Gene position: 2106241-2107917 (Clockwise)

Preceding gene: 74318034

Following gene: 74318036

Centisome position: 72.38

GC content: 67.14

Gene sequence:

>1677_bases
ATGAGCCGTCCGCTGTTCCAGTTCAAGGGCGGCGTGCACCCGCCGGGGCACAAGGCCGAGTCGAACACGCGGCCGATCCA
CGCGGCGCCGCTGCCGAAAAAGCTCGTCATCCCGCTGCGTCAGCACATCGGAAATCCGGCCAAGCCGGTCGTCAGCGTCG
GTGACCACGTCAGGAAAGGCCAGATCATCGGCGAAGCCGACGGCTATATCTCGACGGCCGTGCACGCGTCGAGCTCGGGC
ATCGTCACGGCCGTCGACCTGCAGCCGGTTCCCCACGTCTCCGGACTCGCCGATCTCTGCGTCACGATCGAAACCGACGG
TCGCGACGAATGGGTCGCCCGCGAGCCGCTCGATCTCGGCGCACCGCCCGCCGAGTTGCGCATGCGCCTGCGCGATCTGG
GCATCGTCGGCCTCGGCGGGGCGGTCTTCCCGAGCGCCGTCAAGCTCGACCCCGGCGCCGCCCAGGTCTGCCCCACGCTG
ATCATCAACGGCGGCGAATGCGAGCCGTGGATCACCTGCGACGACGTGCTCATGCGCCATTTCGCCGACGAAATCCTGCA
GGGCGTGGCGGTGATGCGGCTGCTCCTCGGCAGCAGCGAAATCCTGATCGGCATCGAGGACAACAAGCCCGAAGCCATCG
CCGCGATGCAGGCCGCAGCCGCCAAGCTCGACTTCGCGGTCGAGATCGTCGCGGTGCCCGCGCGCTACCCGGCTGGCGGC
GCCAAGCAGATGATCGAGACGCTGACCGGCAAGCAGGTCCCGTCCGGCAAGCTGTCGACCGACATCGGCATCCAGGTCTT
CAACGTCGGCACCGCGCGTGCGCTCGCCCGCGCTGCCTGTCACGGCGAACCGCTGATCTCCCGCCTCGTGACCGTCACGG
GCCACGTGTTGCGACCACAGAACTTCGAGGTGCTGATCGGCACGCCTATGCACACGCTCATCACGCTCGCCGGGGAGCGC
GACGGCAATACCGGCGTGCTCATGGGCGGACCGATGATGGGCGTGCCGATGCCCAACCTCGACGTTCCGGTGGTGAAGGC
CACGAACTGCGTCCTTGTGAAATCGAAGGAACTCTTCCCGCCGCTGCCCAAGGCCTTGCCGTGCATTCGCTGCACGCGTT
GCGCCGATGCGTGCCCGGCGGAACTGCAGCCGCAGGAACTGTTCCGTTTCGCCAAGGCCGGCGACTTCGGCCGCGCCCAG
GAATACCATCTGTTCGACTGCATCGAATGCGGCTGCTGCAGCTACGTCTGCCCGAGCCACATCCCGCTCGTCGATTTCTA
CCGCTACGCGAAGAGCGAAATCTGGGCCCGCGAGAAGGACAAGCGCGCGTCCGATCTCGCGCGCGAGCGTCACGAGTTCC
GCCAATTCCGCATCGAGCGCGAGAAGAAGGAAAAAGCCGAGAAGCTCGCGGCGAAGGCCCAGGCCAAGCGCGCCGAACTC
GCCGCGGGCGCCGATACGGCGACTCCCGCCGCAGCCGACGCCGACGCCAACGCCAAGAAGGCGCTGATCGCCGCGGCGCT
GGCGCGGGCGCAGGCGAAGAAGGACGAAGTCGCCCCGAAGAACATCGACAACCTGTCGCCCGACACCCGGCACGAGATCG
AAGAGATCGAAGCGCGCCGCGCAAAAATTCGCGAACTGGCCCGCCAGCCGCTGGAATCCGAAGAGAAGAATTCCTGA

Upstream 100 bases:

>100_bases
TCGACTGCATCTCGATGGTGCCGATCGCCGAGGACCTGCCGCACTGGAAATGGAAGCACCCCGTGGTGATGATGAAACAG
GTCGGCGAGAGCACACGCGT

Downstream 100 bases:

>100_bases
TGCCGTCTCCTTACATCCTCGATCGCACGAGCGTCACCGTCGTCATGGCCTGGGTGCTGGCCGCCCTGCTTCCGGGCATC
GGGGTCTACGTCTGGCTGTT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 557

Protein sequence:

>558_residues
MSRPLFQFKGGVHPPGHKAESNTRPIHAAPLPKKLVIPLRQHIGNPAKPVVSVGDHVRKGQIIGEADGYISTAVHASSSG
IVTAVDLQPVPHVSGLADLCVTIETDGRDEWVAREPLDLGAPPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVCPTL
IINGGECEPWITCDDVLMRHFADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKLDFAVEIVAVPARYPAGG
AKQMIETLTGKQVPSGKLSTDIGIQVFNVGTARALARAACHGEPLISRLVTVTGHVLRPQNFEVLIGTPMHTLITLAGER
DGNTGVLMGGPMMGVPMPNLDVPVVKATNCVLVKSKELFPPLPKALPCIRCTRCADACPAELQPQELFRFAKAGDFGRAQ
EYHLFDCIECGCCSYVCPSHIPLVDFYRYAKSEIWAREKDKRASDLARERHEFRQFRIEREKKEKAEKLAAKAQAKRAEL
AAGADTATPAAADADANAKKALIAAALARAQAKKDEVAPKNIDNLSPDTRHEIEEIEARRAKIRELARQPLESEEKNS

Sequences:

>Translated_558_residues
MSRPLFQFKGGVHPPGHKAESNTRPIHAAPLPKKLVIPLRQHIGNPAKPVVSVGDHVRKGQIIGEADGYISTAVHASSSG
IVTAVDLQPVPHVSGLADLCVTIETDGRDEWVAREPLDLGAPPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVCPTL
IINGGECEPWITCDDVLMRHFADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKLDFAVEIVAVPARYPAGG
AKQMIETLTGKQVPSGKLSTDIGIQVFNVGTARALARAACHGEPLISRLVTVTGHVLRPQNFEVLIGTPMHTLITLAGER
DGNTGVLMGGPMMGVPMPNLDVPVVKATNCVLVKSKELFPPLPKALPCIRCTRCADACPAELQPQELFRFAKAGDFGRAQ
EYHLFDCIECGCCSYVCPSHIPLVDFYRYAKSEIWAREKDKRASDLARERHEFRQFRIEREKKEKAEKLAAKAQAKRAEL
AAGADTATPAAADADANAKKALIAAALARAQAKKDEVAPKNIDNLSPDTRHEIEEIEARRAKIRELARQPLESEEKNS
>Mature_557_residues
SRPLFQFKGGVHPPGHKAESNTRPIHAAPLPKKLVIPLRQHIGNPAKPVVSVGDHVRKGQIIGEADGYISTAVHASSSGI
VTAVDLQPVPHVSGLADLCVTIETDGRDEWVAREPLDLGAPPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVCPTLI
INGGECEPWITCDDVLMRHFADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKLDFAVEIVAVPARYPAGGA
KQMIETLTGKQVPSGKLSTDIGIQVFNVGTARALARAACHGEPLISRLVTVTGHVLRPQNFEVLIGTPMHTLITLAGERD
GNTGVLMGGPMMGVPMPNLDVPVVKATNCVLVKSKELFPPLPKALPCIRCTRCADACPAELQPQELFRFAKAGDFGRAQE
YHLFDCIECGCCSYVCPSHIPLVDFYRYAKSEIWAREKDKRASDLARERHEFRQFRIEREKKEKAEKLAAKAQAKRAELA
AGADTATPAAADADANAKKALIAAALARAQAKKDEVAPKNIDNLSPDTRHEIEEIEARRAKIRELARQPLESEEKNS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=469, Percent_Identity=46.0554371002132, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 60105; Mature: 59974

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPLFQFKGGVHPPGHKAESNTRPIHAAPLPKKLVIPLRQHIGNPAKPVVSVGDHVRKG
CCCCCCHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHCC
QIIGEADGYISTAVHASSSGIVTAVDLQPVPHVSGLADLCVTIETDGRDEWVAREPLDLG
CEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
APPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVCPTLIINGGECEPWITCDDVLMRH
CCHHHHHHHHHHCCEEECCHHHCCCCEEECCCHHHHCCEEEEECCCCCCCCCHHHHHHHH
FADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKLDFAVEIVAVPARYPAGG
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCH
AKQMIETLTGKQVPSGKLSTDIGIQVFNVGTARALARAACHGEPLISRLVTVTGHVLRPQ
HHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHEECCC
NFEVLIGTPMHTLITLAGERDGNTGVLMGGPMMGVPMPNLDVPVVKATNCVLVKSKELFP
CCEEEECCCHHHHEEEECCCCCCCEEEECCCEECCCCCCCCCCEEECCCEEEEECCCCCC
PLPKALPCIRCTRCADACPAELQPQELFRFAKAGDFGRAQEYHLFDCIECGCCSYVCPSH
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
IPLVDFYRYAKSEIWAREKDKRASDLARERHEFRQFRIEREKKEKAEKLAAKAQAKRAEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGADTATPAAADADANAKKALIAAALARAQAKKDEVAPKNIDNLSPDTRHEIEEIEARR
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
AKIRELARQPLESEEKNS
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SRPLFQFKGGVHPPGHKAESNTRPIHAAPLPKKLVIPLRQHIGNPAKPVVSVGDHVRKG
CCCCCHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHCC
QIIGEADGYISTAVHASSSGIVTAVDLQPVPHVSGLADLCVTIETDGRDEWVAREPLDLG
CEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
APPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVCPTLIINGGECEPWITCDDVLMRH
CCHHHHHHHHHHCCEEECCHHHCCCCEEECCCHHHHCCEEEEECCCCCCCCCHHHHHHHH
FADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKLDFAVEIVAVPARYPAGG
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCH
AKQMIETLTGKQVPSGKLSTDIGIQVFNVGTARALARAACHGEPLISRLVTVTGHVLRPQ
HHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHEECCC
NFEVLIGTPMHTLITLAGERDGNTGVLMGGPMMGVPMPNLDVPVVKATNCVLVKSKELFP
CCEEEECCCHHHHEEEECCCCCCCEEEECCCEECCCCCCCCCCEEECCCEEEEECCCCCC
PLPKALPCIRCTRCADACPAELQPQELFRFAKAGDFGRAQEYHLFDCIECGCCSYVCPSH
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
IPLVDFYRYAKSEIWAREKDKRASDLARERHEFRQFRIEREKKEKAEKLAAKAQAKRAEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGADTATPAAADADANAKKALIAAALARAQAKKDEVAPKNIDNLSPDTRHEIEEIEARR
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
AKIRELARQPLESEEKNS
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]