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The map label for this gene is intB [H]

Identifier: 74318023

GI number: 74318023

Start: 2092194

End: 2093471

Strand: Reverse

Name: intB [H]

Synonym: Tbd_2005

Alternate gene names: 74318023

Gene position: 2093471-2092194 (Counterclockwise)

Preceding gene: 74318025

Following gene: 74318022

Centisome position: 71.95

GC content: 62.28

Gene sequence:

>1278_bases
ATGCGGGACTGTCAAAAGTCACATACCGTCACACGAAAGGAGCGCGCCGTGGCGCTGACCGATACCGCCGTCAAGAAGGC
CAAGCCGGGCGACAAGCCCTACAAGATGGCCGACGAAAAGGGACTGTACTTGCTGGTGAACCAGGCCGGGAAGTACTGGC
GTATGGATTACCGCTTTCTAGGCAAGCGCAAGACGCTGGCGCTGGGGGTGTACTCCGACGTGAGCCTTGCCCGCGCCCGC
CAGAAACGCGACGACGCGCGGGCGATGCTGGCCGATGGCACGGACCCCGGCGAGCAGCGCAAGGAAACCAAGCGCGCCAA
CCAGGCAGCGCAAGCCAACTCGTTCGAGGCCGTGGCACGGGAATGGCACGCGATGAAACTCAAGCGGAAGTGGACGCAAT
CGACCGCGGACAAGACCATGGCGCAGCTCGAGGCCTATGTCTTTCCTGAGATGGGACACCTGCCCATCGCCAGCGTGAAG
GCTTCGCAATTGCTGGCGATGCTACGCAAAGTGGAGAATCGCGGCATTGCCTACACTGCCGTCCGTCTACGCGAAGTGTG
CGGGCAGATATTCCGCTATGGCGTGGCGACCGGCAGGGCGGAAGACAACCCCGCGGCGCACCTTCTAGGCGCCCTGCATA
AGCCCGAGGTCAATCACCGGCCGGCCATCACCGATCGGCGCGGCTTTGGCGCCTTCCTGCGCGATCTGAGAGAGGCCACC
GGCTACGATGCCGTCACCCGCCACGCGGCTTATTTCGCGTTGTTGACGTTTGTTCGCGCCCAGGAATTTCGTTACGCCAA
GTGGGAAGAAATCGACTGGCAGGCCAAGGAATGGAAAGTCCCGGCCAAGCGCATGAAGACCGGCAAGGCCTTGCCAGCCC
ATACCGTGCCCCTGTCGCAGCAGGCGCTCGCGCTGTTAACCGAATTGAAGAACCTCACCGGGCATTCGCCCTACCTGTTT
CCCAAGGTGAAAGGCTACGGCGACGCGGAAGTCATATCCGAGAACACCGTCGGCAAGATGCTGAACAAGATGGGGTATCA
AGGGCGCCAGTGCGTGCATGGGTTTCGGGCCTCGGCGCGCTCGATCCTGAGTGAGCAGGGATGGAGCCGCGAGGCGATGG
AACGCCAGCTAGACCACAAGGAGACGGATAGCACTGTAGCCGCCTACGCGAGATCCGAGCATCTGCCCGAGCGACGCAAT
ATGATGCAGGCGTGGGCGGACACTTGCGACGCGCTGGAAACCGGGGCGGAAATTATCCTGCTGCCTCGGACGGCTTAA

Upstream 100 bases:

>100_bases
AAAACCCAAGAAAATAAGCGACTATCGCCTTTTCTGTTGTGTCATTTCATTTCACGGCGTAGCATCGAAACACCGTCAGA
CTGACGGTAGTTCATACGGT

Downstream 100 bases:

>100_bases
TGTTTTTGCGTGAACAGGGTTGAAAGTCGGTGAAATGTGCTTTATGGTTCGGGGTAGGGGCCATTGCGTCCTTTTGAAAT
CCAGAAAAACCGCAAACCGG

Product: cp4-like integrase protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MRDCQKSHTVTRKERAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGKYWRMDYRFLGKRKTLALGVYSDVSLARAR
QKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTADKTMAQLEAYVFPEMGHLPIASVK
ASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREAT
GYDAVTRHAAYFALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGHSPYLF
PKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMERQLDHKETDSTVAAYARSEHLPERRN
MMQAWADTCDALETGAEIILLPRTA

Sequences:

>Translated_425_residues
MRDCQKSHTVTRKERAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGKYWRMDYRFLGKRKTLALGVYSDVSLARAR
QKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTADKTMAQLEAYVFPEMGHLPIASVK
ASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREAT
GYDAVTRHAAYFALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGHSPYLF
PKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMERQLDHKETDSTVAAYARSEHLPERRN
MMQAWADTCDALETGAEIILLPRTA
>Mature_425_residues
MRDCQKSHTVTRKERAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGKYWRMDYRFLGKRKTLALGVYSDVSLARAR
QKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTADKTMAQLEAYVFPEMGHLPIASVK
ASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREAT
GYDAVTRHAAYFALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGHSPYLF
PKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMERQLDHKETDSTVAAYARSEHLPERRN
MMQAWADTCDALETGAEIILLPRTA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=405, Percent_Identity=35.5555555555556, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1788690, Length=395, Percent_Identity=33.6708860759494, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=34.1584158415842, Blast_Score=191, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47997; Mature: 47997

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDCQKSHTVTRKERAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGKYWRMDYRFL
CCCCHHHHCHHHHHHEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHH
GKRKTLALGVYSDVSLARARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAR
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
EWHAMKLKRKWTQSTADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
VRLREVCGQIFRYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREAT
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
GYDAVTRHAAYFALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCHH
QALALLTELKNLTGHSPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASAR
HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SILSEQGWSREAMERQLDHKETDSTVAAYARSEHLPERRNMMQAWADTCDALETGAEIIL
HHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEE
LPRTA
ECCCC
>Mature Secondary Structure
MRDCQKSHTVTRKERAVALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGKYWRMDYRFL
CCCCHHHHCHHHHHHEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHH
GKRKTLALGVYSDVSLARARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAR
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
EWHAMKLKRKWTQSTADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
VRLREVCGQIFRYGVATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREAT
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
GYDAVTRHAAYFALLTFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCHH
QALALLTELKNLTGHSPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASAR
HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SILSEQGWSREAMERQLDHKETDSTVAAYARSEHLPERRNMMQAWADTCDALETGAEIIL
HHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEE
LPRTA
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]