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The map label for this gene is yfgB [C]

Identifier: 74317969

GI number: 74317969

Start: 2044767

End: 2045855

Strand: Reverse

Name: yfgB [C]

Synonym: Tbd_1951

Alternate gene names: 74317969

Gene position: 2045855-2044767 (Counterclockwise)

Preceding gene: 74317971

Following gene: 74317968

Centisome position: 70.31

GC content: 71.99

Gene sequence:

>1089_bases
ATGCGACTCCCCGAACTCCGACAACGTCTGCGCGACCACGGTGCTGCGCCCTGCCACGCGGGGCGGGTGCTGCGTGCGTG
GGTCGCGGGGCGTCCGCTCGACAACCGGCGGCAGCGCGCCGAGGATTTTTTGCCGCTTCGGCTACGCAACGCACTTCCCG
GCCTGTTCGACGAATTGCGTAATCTGGCGCAGGTGCATTCCGAGCACCCCGGTGAGGACGGCTCGGCGCGCCTGCTCGTG
CGGCTCGCCGACGGCCAGACCGTCGAGAGCGTGCTGCTGCCGCGCGACGGCGTCTGCGTGTCGACCCAGGTCGGCTGCGC
CGTGGGCTGCGTGTTCTGCATGACCGGCCGCGCCGGCCTGCTGCGCCAGCTTTCGGGCGCGGAGATCGTCGCGCAGGTGG
TGCTCGCGCGCAGCCGCCGCCCGGTCAGGAAGGTCGTCTTCATGGGCATGGGCGAGCCGGCGCACAACCTCGACAACGTG
CTCGACGCGATCGAGCTGCTGGGGCTGGAAGGCGGGATCGGCCACAAGAACCTCGTGTTCTCGACCGTGGGCGACCGGCG
CGTGTTCGAGCGCTTGCCGCAGTCGACGGTGAAGCCCGCGCGGGCGCTGTCGCTGCACACCACCGACCGCGCGCTGCGCC
GCCGCCTGCTGCCGCGCGCGCCCGACATCGCGCCGCAGGAACTGGTCGAGCTCGGCGAGGCCTATGCCCGGCGCACCGGT
TACCCGATCCAATACCAATGGACCCTGCTCGAAGGCATCAACGACACAGAGGCCGAGCTGGAGGGGATCGCGCGTCTCTT
GGCCGGCCGCTACGCGGTGATGAATCTGATCCCATACAACGCGACCGAAGCCGACGGTTTCAACCGCCCGAGCTGGGCGC
GCGCCGCCGAGATGGCGCGGCGCCTGCACCGGCGCGGCGTACTCGCGAAGCTGCGCCACTCGGCGGGGCAGGACGTGGAC
GGCGGCTGCGGCCAGTTGCGCGCGCGGGCGCTCGATGCGGCGCCAGTCCTGGCCCGGCGTCCGCTCCCCAGCGCGGAAAC
GCCGGCTGCGTCGCCGAAGGCGGCGGCTTCGATCGGCTTCCCCGGCTGA

Upstream 100 bases:

>100_bases
GCGGATCGCGAGGGTTAATGGAGTTCAGGCGTATTGGAGCCCGCAGGCGTGTTGACCCGCGACGGCGTGGGGGGCACGTG
CGTGCTACCATCCGCGCGCC

Downstream 100 bases:

>100_bases
CCCCGGTTTTCGTCGAGCCCGCGCCATGAGCCGCAACACGATTCGTATCCGCGCGTCCTTTTCCTTCAAGGGCGAGGCCT
GCGAGCCCGAAGCGCGCATC

Product: ribosomal RNA large subunit methyltransferase N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MRLPELRQRLRDHGAAPCHAGRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFDELRNLAQVHSEHPGEDGSARLLV
RLADGQTVESVLLPRDGVCVSTQVGCAVGCVFCMTGRAGLLRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNV
LDAIELLGLEGGIGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRTG
YPIQYQWTLLEGINDTEAELEGIARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVD
GGCGQLRARALDAAPVLARRPLPSAETPAASPKAAASIGFPG

Sequences:

>Translated_362_residues
MRLPELRQRLRDHGAAPCHAGRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFDELRNLAQVHSEHPGEDGSARLLV
RLADGQTVESVLLPRDGVCVSTQVGCAVGCVFCMTGRAGLLRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNV
LDAIELLGLEGGIGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRTG
YPIQYQWTLLEGINDTEAELEGIARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVD
GGCGQLRARALDAAPVLARRPLPSAETPAASPKAAASIGFPG
>Mature_362_residues
MRLPELRQRLRDHGAAPCHAGRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFDELRNLAQVHSEHPGEDGSARLLV
RLADGQTVESVLLPRDGVCVSTQVGCAVGCVFCMTGRAGLLRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNV
LDAIELLGLEGGIGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRTG
YPIQYQWTLLEGINDTEAELEGIARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVD
GGCGQLRARALDAAPVLARRPLPSAETPAASPKAAASIGFPG

Specific function: Unknown

COG id: COG0820

COG function: function code R; Predicted Fe-S-cluster redox enzyme

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. RlmN family

Homologues:

Organism=Escherichia coli, GI1788865, Length=347, Percent_Identity=28.2420749279539, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1951_THIDA (Q3SHI2)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315709.1
- STRING:   Q3SHI2
- GeneID:   3674061
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_1951
- NMPDR:   fig|292415.3.peg.2049
- eggNOG:   COG0820
- HOGENOM:   HBG335345
- OMA:   GGCGQLR
- ProtClustDB:   PRK14464
- BioCyc:   TDEN292415:TBD_1951-MONOMER
- GO:   GO:0005737
- InterPro:   IPR007197
- InterPro:   IPR004383
- PIRSF:   PIRSF006004

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 39527; Mature: 39527

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPELRQRLRDHGAAPCHAGRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFDELR
CCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHH
NLAQVHSEHPGEDGSARLLVRLADGQTVESVLLPRDGVCVSTQVGCAVGCVFCMTGRAGL
HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHH
LRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNVLDAIELLGLEGGIGHKNLVF
HHHHCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
STVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRTG
ECCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
YPIQYQWTLLEGINDTEAELEGIARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMAR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RLHRRGVLAKLRHSAGQDVDGGCGQLRARALDAAPVLARRPLPSAETPAASPKAAASIGF
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PG
CC
>Mature Secondary Structure
MRLPELRQRLRDHGAAPCHAGRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFDELR
CCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHH
NLAQVHSEHPGEDGSARLLVRLADGQTVESVLLPRDGVCVSTQVGCAVGCVFCMTGRAGL
HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHH
LRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNVLDAIELLGLEGGIGHKNLVF
HHHHCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
STVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELVELGEAYARRTG
ECCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
YPIQYQWTLLEGINDTEAELEGIARLLAGRYAVMNLIPYNATEADGFNRPSWARAAEMAR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RLHRRGVLAKLRHSAGQDVDGGCGQLRARALDAAPVLARRPLPSAETPAASPKAAASIGF
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA