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The map label for this gene is rfbE [H]

Identifier: 74317895

GI number: 74317895

Start: 1974523

End: 1975251

Strand: Reverse

Name: rfbE [H]

Synonym: Tbd_1877

Alternate gene names: 74317895

Gene position: 1975251-1974523 (Counterclockwise)

Preceding gene: 74317896

Following gene: 74317894

Centisome position: 67.88

GC content: 56.38

Gene sequence:

>729_bases
GTGTCTCATATTCGCGCCACCGACCTCGTCGTAGATTTTCCTATCTACGACGCCTCCCAACGTTCCTTGCGAAAGAGGTT
TCTCAGCGCCGCTACAGGCGGAGCAATTACCCACGAGGGCCAACATCGAGTTGTGGTCCGGCCACTTGACCACATAAGTT
TTGATTTCCGCGAGGGGGACCGTATCGGGGTGGTTGGCCACAACGGTGCCGGTAAGACGACGCTGCTGCGGGTGTTGAAT
GGCGTCTACGAGCCGGTTGGCGGCAGCCTCGAGATATCCGGCCGGCTTGCATCGCTACTGGACATCACGAACGGCTTTGA
CACTGATGCGACAGGTTACGAGAACATCGTGCTGCGCGGCTTGATGATGGGGATAAGACCGCGTGAAATTCAGCCAAAGA
TTGCGGAGATCGCCGAATTCTCTGGCCTCGGAGAGTATCTCGACCTCCCCTTGCGGACCTACTCTTCCGGGATGGTCTTA
CGTCTAGCGTTCGCTGTGTCCACGTCGGTGGATGCGGATATCCTGCTCATGGACGAATGGCTGAGTGTGGGGGATGCGGA
ATTCAATGAAAAAGCCTCGAAGCGTTTGAATGAACTGATAAGCAGGACAGCCATTATCGTCATCGCTTCCCACGACACGG
CCATGCTGAAACGCGTCTGTAACCGAATCATTCGCTTGGAGCACGGCAGGCTTTCGGAGGGGGACCAGATGCTGGATCAC
CCGCAATAG

Upstream 100 bases:

>100_bases
AAATTTTTGGCATCACTGCGCTACTGACTGTGGTCGGATTGTCGGTCACCCTTCTATTCTTTGCGCGTTTTCGTTCACGC
GTTGCGTACTGGCTCTGACC

Downstream 100 bases:

>100_bases
CGCCGTGGGTGGATTGGGTTTTTGATGAATTGGAGAAATGAATGCGCTATAGCGATGTAATGGCCGATTGGCTTAAAGAT
ATGGGTTTTACACACTGCTT

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSHIRATDLVVDFPIYDASQRSLRKRFLSAATGGAITHEGQHRVVVRPLDHISFDFREGDRIGVVGHNGAGKTTLLRVLN
GVYEPVGGSLEISGRLASLLDITNGFDTDATGYENIVLRGLMMGIRPREIQPKIAEIAEFSGLGEYLDLPLRTYSSGMVL
RLAFAVSTSVDADILLMDEWLSVGDAEFNEKASKRLNELISRTAIIVIASHDTAMLKRVCNRIIRLEHGRLSEGDQMLDH
PQ

Sequences:

>Translated_242_residues
MSHIRATDLVVDFPIYDASQRSLRKRFLSAATGGAITHEGQHRVVVRPLDHISFDFREGDRIGVVGHNGAGKTTLLRVLN
GVYEPVGGSLEISGRLASLLDITNGFDTDATGYENIVLRGLMMGIRPREIQPKIAEIAEFSGLGEYLDLPLRTYSSGMVL
RLAFAVSTSVDADILLMDEWLSVGDAEFNEKASKRLNELISRTAIIVIASHDTAMLKRVCNRIIRLEHGRLSEGDQMLDH
PQ
>Mature_241_residues
SHIRATDLVVDFPIYDASQRSLRKRFLSAATGGAITHEGQHRVVVRPLDHISFDFREGDRIGVVGHNGAGKTTLLRVLNG
VYEPVGGSLEISGRLASLLDITNGFDTDATGYENIVLRGLMMGIRPREIQPKIAEIAEFSGLGEYLDLPLRTYSSGMVLR
LAFAVSTSVDADILLMDEWLSVGDAEFNEKASKRLNELISRTAIIVIASHDTAMLKRVCNRIIRLEHGRLSEGDQMLDHP
Q

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=187, Percent_Identity=25.1336898395722, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI6005701, Length=226, Percent_Identity=23.8938053097345, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI153792144, Length=232, Percent_Identity=23.2758620689655, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI27477115, Length=147, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=24.7787610619469, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=202, Percent_Identity=26.7326732673267, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=23.943661971831, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787029, Length=200, Percent_Identity=26.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=24.2009132420091, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=205, Percent_Identity=25.3658536585366, Blast_Score=61, Evalue=6e-11,
Organism=Drosophila melanogaster, GI116007184, Length=185, Percent_Identity=25.9459459459459, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221500365, Length=185, Percent_Identity=25.9459459459459, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26697; Mature: 26566

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHIRATDLVVDFPIYDASQRSLRKRFLSAATGGAITHEGQHRVVVRPLDHISFDFREGD
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHCEEECCCCC
RIGVVGHNGAGKTTLLRVLNGVYEPVGGSLEISGRLASLLDITNGFDTDATGYENIVLRG
EEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH
LMMGIRPREIQPKIAEIAEFSGLGEYLDLPLRTYSSGMVLRLAFAVSTSVDADILLMDEW
HHHCCCCCCCCCHHHHHHHHCCCCHHHHCCHHHCCCCCEEEEEEHHHCCCCCEEEEEEHH
LSVGDAEFNEKASKRLNELISRTAIIVIASHDTAMLKRVCNRIIRLEHGRLSEGDQMLDH
HCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHCCC
PQ
CC
>Mature Secondary Structure 
SHIRATDLVVDFPIYDASQRSLRKRFLSAATGGAITHEGQHRVVVRPLDHISFDFREGD
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHCEEECCCCC
RIGVVGHNGAGKTTLLRVLNGVYEPVGGSLEISGRLASLLDITNGFDTDATGYENIVLRG
EEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH
LMMGIRPREIQPKIAEIAEFSGLGEYLDLPLRTYSSGMVLRLAFAVSTSVDADILLMDEW
HHHCCCCCCCCCHHHHHHHHCCCCHHHHCCHHHCCCCCEEEEEEHHHCCCCCEEEEEEHH
LSVGDAEFNEKASKRLNELISRTAIIVIASHDTAMLKRVCNRIIRLEHGRLSEGDQMLDH
HCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHCCC
PQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]