| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317880
Identifier: 74317880
GI number: 74317880
Start: 1958268
End: 1959530
Strand: Reverse
Name: 74317880
Synonym: Tbd_1862
Alternate gene names: NA
Gene position: 1959530-1958268 (Counterclockwise)
Preceding gene: 74317881
Following gene: 74317879
Centisome position: 67.34
GC content: 62.79
Gene sequence:
>1263_bases ATGACGACATCCGGCAAGCCGTTCGTTCCCGCCAGCCAGCGCGGCATCTCCCTGATCGTCACCTTGATGATCGTGATCCT GCTGAGCCTGCTCGCGCTCTACGGCGCAGGCGTGCTGACGCTCGATACCCGTTCCGCGGCCAACGATTTTCGTGCGCGTG AGGCCCTCGCGGCGGCCGAGTCGGGGATGGAGCAGGGCTTGGGCCTGCTGAACGCCAATCGGGCACGCCTCAGCCCCAGC GGATTGCATAACAGTGACGACCTGACTACGACCCCGATCCTGACCTGGACGACCTGTACCAGTTCGGCGGCTCCATGCCT GCCGATCCGCTCGGGCGATCGGACCAATTGGAAATACCTTGCGATCAATACATATTCCAGCGGTAGCCTGACCAGTCAGC CGAGTCAGGGCAGTTTCGAGCTGTTCCTGCTGACCCCCGTCAGCGGTGCAAGCAGCCGACTGGTATACAACGTTGTCGCC ATCGGCAAGTCGGCGGATACCACCAGCACCTCGGTGATCAAGCAGGGCGCGTTTTTCTACCCGTTGCTGCTCGGCAACGT CGGCACGCCGCTTGCGGCGGCGAGCAACGTCGACTTGACCGGCAACTACAGCATCATCACCAACTCGAACGGCGGCGGAT CGGGCGTACCCGTGTCGGCCTGGTCGGACGGCGCGTTCAGCCCGGGCGGAAGCTTTGCAAGTTGCCACGTCGGCGATTTC ACCGGCGGGGCCTGCCCGTCGTCCGAAGCGCTCACCTCGAGCGGCACGGTCGGTCCCGACATGATCGGGAACGATGCCAA CTTCCCCGCCGACCTGTTTCTGTTCCTGTTCGGCGTCCCCGAAACCGAGTATCAGAAAATCAAGGATCAAGCGAAGGTCG TGACGAGTTGTGCCGGCCTCGGCGCGACATCCAGCGGCCTGATCTGGGTCACCGGCGACTGCAATCCGCCCGGTCAGGTC GGAACAGCCGACAATCCGGTGCTTCTCGTGGTGGAAGGCGACACCACGTTCAACGCCGGCACTGAATTCTACGGTCTGCT GTACCTGTTCGACCCGGCGTTCGCAGCGGGCACCCCGCCGCGCCTGATCGCCAACGGCAACGCTCACCTGTACGGCGCAT TGTTTGCGCACGATGGCGTCGATTTGCAGCTTACGGGCGGATTCGTCCTCGAATTCGACTCCGAAGTTTTGGAAAACCTG AAAAACAGCCCATCCGGTCGCAATTTGGCGCGCATTCCCGGCGCCTGGTCGGATGTTCAGTGA
Upstream 100 bases:
>100_bases AATTCACGATCAAGATCACGGGCCACCTGAAAGCCGACCCCGGCGTCGAGCGGACGCTTCAGGAAACCATTCGTGTCCGC AACGACAGATTGAGCTGACC
Downstream 100 bases:
>100_bases TGGAGACGGCTATGCCTCGCTTTCCTGGTCAAATTGGCACGCGGCATCAAGGCGGCTTCAGCCTGGTCGAGGCGCTGTTT TCCGCATTGATACTGGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTTSGKPFVPASQRGISLIVTLMIVILLSLLALYGAGVLTLDTRSAANDFRAREALAAAESGMEQGLGLLNANRARLSPS GLHNSDDLTTTPILTWTTCTSSAAPCLPIRSGDRTNWKYLAINTYSSGSLTSQPSQGSFELFLLTPVSGASSRLVYNVVA IGKSADTTSTSVIKQGAFFYPLLLGNVGTPLAAASNVDLTGNYSIITNSNGGGSGVPVSAWSDGAFSPGGSFASCHVGDF TGGACPSSEALTSSGTVGPDMIGNDANFPADLFLFLFGVPETEYQKIKDQAKVVTSCAGLGATSSGLIWVTGDCNPPGQV GTADNPVLLVVEGDTTFNAGTEFYGLLYLFDPAFAAGTPPRLIANGNAHLYGALFAHDGVDLQLTGGFVLEFDSEVLENL KNSPSGRNLARIPGAWSDVQ
Sequences:
>Translated_420_residues MTTSGKPFVPASQRGISLIVTLMIVILLSLLALYGAGVLTLDTRSAANDFRAREALAAAESGMEQGLGLLNANRARLSPS GLHNSDDLTTTPILTWTTCTSSAAPCLPIRSGDRTNWKYLAINTYSSGSLTSQPSQGSFELFLLTPVSGASSRLVYNVVA IGKSADTTSTSVIKQGAFFYPLLLGNVGTPLAAASNVDLTGNYSIITNSNGGGSGVPVSAWSDGAFSPGGSFASCHVGDF TGGACPSSEALTSSGTVGPDMIGNDANFPADLFLFLFGVPETEYQKIKDQAKVVTSCAGLGATSSGLIWVTGDCNPPGQV GTADNPVLLVVEGDTTFNAGTEFYGLLYLFDPAFAAGTPPRLIANGNAHLYGALFAHDGVDLQLTGGFVLEFDSEVLENL KNSPSGRNLARIPGAWSDVQ >Mature_419_residues TTSGKPFVPASQRGISLIVTLMIVILLSLLALYGAGVLTLDTRSAANDFRAREALAAAESGMEQGLGLLNANRARLSPSG LHNSDDLTTTPILTWTTCTSSAAPCLPIRSGDRTNWKYLAINTYSSGSLTSQPSQGSFELFLLTPVSGASSRLVYNVVAI GKSADTTSTSVIKQGAFFYPLLLGNVGTPLAAASNVDLTGNYSIITNSNGGGSGVPVSAWSDGAFSPGGSFASCHVGDFT GGACPSSEALTSSGTVGPDMIGNDANFPADLFLFLFGVPETEYQKIKDQAKVVTSCAGLGATSSGLIWVTGDCNPPGQVG TADNPVLLVVEGDTTFNAGTEFYGLLYLFDPAFAAGTPPRLIANGNAHLYGALFAHDGVDLQLTGGFVLEFDSEVLENLK NSPSGRNLARIPGAWSDVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43402; Mature: 43271
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSGKPFVPASQRGISLIVTLMIVILLSLLALYGAGVLTLDTRSAANDFRAREALAAAE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHH SGMEQGLGLLNANRARLSPSGLHNSDDLTTTPILTWTTCTSSAAPCLPIRSGDRTNWKYL HHHHHCCCEECCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCEEEECCCCCCCEEEE AINTYSSGSLTSQPSQGSFELFLLTPVSGASSRLVYNVVAIGKSADTTSTSVIKQGAFFY EEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHCCCEEE PLLLGNVGTPLAAASNVDLTGNYSIITNSNGGGSGVPVSAWSDGAFSPGGSFASCHVGDF HHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEECCCC TGGACPSSEALTSSGTVGPDMIGNDANFPADLFLFLFGVPETEYQKIKDQAKVVTSCAGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC GATSSGLIWVTGDCNPPGQVGTADNPVLLVVEGDTTFNAGTEFYGLLYLFDPAFAAGTPP CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHEEEEEEECCHHHCCCCC RLIANGNAHLYGALFAHDGVDLQLTGGFVLEFDSEVLENLKNSPSGRNLARIPGAWSDVQ EEEECCCCEEEEEEEECCCEEEEEECCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCC >Mature Secondary Structure TTSGKPFVPASQRGISLIVTLMIVILLSLLALYGAGVLTLDTRSAANDFRAREALAAAE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHH SGMEQGLGLLNANRARLSPSGLHNSDDLTTTPILTWTTCTSSAAPCLPIRSGDRTNWKYL HHHHHCCCEECCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCEEEECCCCCCCEEEE AINTYSSGSLTSQPSQGSFELFLLTPVSGASSRLVYNVVAIGKSADTTSTSVIKQGAFFY EEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHCCCEEE PLLLGNVGTPLAAASNVDLTGNYSIITNSNGGGSGVPVSAWSDGAFSPGGSFASCHVGDF HHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEECCCC TGGACPSSEALTSSGTVGPDMIGNDANFPADLFLFLFGVPETEYQKIKDQAKVVTSCAGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC GATSSGLIWVTGDCNPPGQVGTADNPVLLVVEGDTTFNAGTEFYGLLYLFDPAFAAGTPP CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHEEEEEEECCHHHCCCCC RLIANGNAHLYGALFAHDGVDLQLTGGFVLEFDSEVLENLKNSPSGRNLARIPGAWSDVQ EEEECCCCEEEEEEEECCCEEEEEECCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA