| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is yfjF [C]
Identifier: 74317772
GI number: 74317772
Start: 1846233
End: 1846571
Strand: Reverse
Name: yfjF [C]
Synonym: Tbd_1754
Alternate gene names: 74317772
Gene position: 1846571-1846233 (Counterclockwise)
Preceding gene: 74317773
Following gene: 74317770
Centisome position: 63.46
GC content: 66.37
Gene sequence:
>339_bases ATGAGCCTGAACGTCGAAGTCGTCTACGCGCTGCCGTCCGAGCAGCCCTTGCTCAACGTCCAGCTGGCCGAGGGCGCGAC CGTCGAAGACGCGATCCGCGCGTCGGGCGTGCTCGAGGCTTTTCCGGAAATCGATCTCGCGCGCAACAAGGTCGGAATCT TCAGCAAGCTCGTCAAGCTCAATGAACCCGTGCGCGACCGCGATCGGGTCGAGATCTACCGGCCGTTGATCGCCGATCCC AAGGAGGTGCGGCGCAAGCGCGCGGAAGAAGGCAAGGTCACGCGCAAGGGCGGTGGCGACGCGGCTACGCCAGAGGCGGG CGGACCCGAGCCGACCTGA
Upstream 100 bases:
>100_bases CCAGCCGCGTGCTCGAAGCGTTGCTGACGCCGGTCTTCGGCCACATCACCAATACCTTCGTCGATGCCTTCGTGCACCGC GCAGACGAGATATACGCCGC
Downstream 100 bases:
>100_bases AACGGCTCTGTCGCCGCGCGTCGTCTGCTGGCCAACACCCATGCCGATATGAAAAGCTTGCAGCCGCGGGCAGGGCCCGA CTCAGCACTCGCAGAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 112; Mature: 111
Protein sequence:
>112_residues MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADP KEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT
Sequences:
>Translated_112_residues MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADP KEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT >Mature_111_residues SLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADPK EVRRKRAEEGKVTRKGGGDAATPEAGGPEPT
Specific function: Unknown
COG id: COG2914
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0125 (rnfH) family [H]
Homologues:
Organism=Escherichia coli, GI87082139, Length=89, Percent_Identity=65.1685393258427, Blast_Score=113, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005346 [H]
Pfam domain/function: PF03658 UPF0125 [H]
EC number: NA
Molecular weight: Translated: 12191; Mature: 12060
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKL CCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH NEPVRDRDRVEIYRPLIADPKEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT CCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure SLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKL CCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH NEPVRDRDRVEIYRPLIADPKEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT CCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA