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The map label for this gene is rbcR [H]

Identifier: 74317735

GI number: 74317735

Start: 1803190

End: 1804134

Strand: Reverse

Name: rbcR [H]

Synonym: Tbd_1717

Alternate gene names: 74317735

Gene position: 1804134-1803190 (Counterclockwise)

Preceding gene: 74317737

Following gene: 74317734

Centisome position: 62.0

GC content: 62.86

Gene sequence:

>945_bases
ATGGCCGACCGCAGACTCCAAGTATTCTACACCGTCGCCAAACAGCTCAGTTTCACCAAGGCGGCCGACATTCTGTACAT
GACGCAGCCTGCCGTCACGTTTCAGGTCAAGCAGCTCGAAGAGCATTTCAATACCCGCCTGTTCGAACGCAGCCACGGCA
AGATTTCGCTGACTCCTGCGGGCGAGCTCGTGCTCGGCTACGCCGAACGGATTCTTGCCTTGAGCGGCGAGATGGAAGCG
CGCGTCGGTGAGCTGACCGGGCAGGTGACCGGACCGCTCATGATCGGTGCGTCGACGACGATCGCGGAATACCAGTTGCC
GCGCATTCTCGGCGAGTTCAAGGAGCGCTTCCCGCAGGTTCAGGCGCGGCTGACCGTCGCCAATTCGGAAACGGTCGCGG
CCAAGGTCGCTGACCATTCGCTCGACGTCGGTCTCATCGAGGCCCCGTCCCACAACCCGAACCTGACGACCGTGGCGTGT
TGCGAGGACGAACTCGTGATGATCTGCGCCCCTGCCCACACCCTGGCGACGCGTTCGAACGTAAGCGCGCGCGAAATCGC
CGACCAGCGCTACGTGTCGCGCGAGCACGGCTCCGGCACGCGGGAAGTCGTCGACGACTTTTTCAAGGACCACGGCGTCA
ATCCGGACGACCTGCACATCGAAATGGAACTCGGCAGCCGCGAGGCCATCAAGGGCGCGGTCGAGGCCGGCCTCGGCGTC
GCGATCATGTCGGCGTCTACGGTGACGAAGGAGATCCAGCTCGGAACCCTGGTCGCAGTTCCGCTCAATCCGCGGCTGAC
ACGCGAGTTGTCGATGGTCTACGCACCCGAGAAATTCCGCAGCAAACTGCTCGACGCCTTCATCAGCTTCGTCGAAAACA
AGTTCCAGCAGTGCAACATCGACGTCGCGCCGTTCCGGCGACCGTTCAAGGGCCGCGCACGCTGA

Upstream 100 bases:

>100_bases
TGAAAGCCCCGTGATTACAAGGGTTTGATGAACGGGTGGTTTCAACACGGGCGGGTTTGTGCTTGAATAAAAAACTTTTC
TGACCCATGGGCGGGGATTA

Downstream 100 bases:

>100_bases
TGCCCGACGGCAAGCGGCTGAGGTCGCTGTTCCACTCCCTGTCGGAGTCCCGGCAACAGGCCCTGCTCGATTTCGCCGAA
TTCCTGGCCGGCAAGGAAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MADRRLQVFYTVAKQLSFTKAADILYMTQPAVTFQVKQLEEHFNTRLFERSHGKISLTPAGELVLGYAERILALSGEMEA
RVGELTGQVTGPLMIGASTTIAEYQLPRILGEFKERFPQVQARLTVANSETVAAKVADHSLDVGLIEAPSHNPNLTTVAC
CEDELVMICAPAHTLATRSNVSAREIADQRYVSREHGSGTREVVDDFFKDHGVNPDDLHIEMELGSREAIKGAVEAGLGV
AIMSASTVTKEIQLGTLVAVPLNPRLTRELSMVYAPEKFRSKLLDAFISFVENKFQQCNIDVAPFRRPFKGRAR

Sequences:

>Translated_314_residues
MADRRLQVFYTVAKQLSFTKAADILYMTQPAVTFQVKQLEEHFNTRLFERSHGKISLTPAGELVLGYAERILALSGEMEA
RVGELTGQVTGPLMIGASTTIAEYQLPRILGEFKERFPQVQARLTVANSETVAAKVADHSLDVGLIEAPSHNPNLTTVAC
CEDELVMICAPAHTLATRSNVSAREIADQRYVSREHGSGTREVVDDFFKDHGVNPDDLHIEMELGSREAIKGAVEAGLGV
AIMSASTVTKEIQLGTLVAVPLNPRLTRELSMVYAPEKFRSKLLDAFISFVENKFQQCNIDVAPFRRPFKGRAR
>Mature_313_residues
ADRRLQVFYTVAKQLSFTKAADILYMTQPAVTFQVKQLEEHFNTRLFERSHGKISLTPAGELVLGYAERILALSGEMEAR
VGELTGQVTGPLMIGASTTIAEYQLPRILGEFKERFPQVQARLTVANSETVAAKVADHSLDVGLIEAPSHNPNLTTVACC
EDELVMICAPAHTLATRSNVSAREIADQRYVSREHGSGTREVVDDFFKDHGVNPDDLHIEMELGSREAIKGAVEAGLGVA
IMSASTVTKEIQLGTLVAVPLNPRLTRELSMVYAPEKFRSKLLDAFISFVENKFQQCNIDVAPFRRPFKGRAR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=35.7388316151203, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI157672245, Length=294, Percent_Identity=27.2108843537415, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=25.4295532646048, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.0549828178694, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=26.0714285714286, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787879, Length=296, Percent_Identity=27.7027027027027, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787530, Length=239, Percent_Identity=27.1966527196653, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=26.643598615917, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082132, Length=303, Percent_Identity=25.4125412541254, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=25.8064516129032, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788887, Length=245, Percent_Identity=26.530612244898, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=25.7142857142857, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789204, Length=274, Percent_Identity=25.1824817518248, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=25.7142857142857, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI2367136, Length=270, Percent_Identity=21.8518518518519, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786401, Length=315, Percent_Identity=28.2539682539683, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=263, Percent_Identity=25.0950570342205, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994962, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=263, Percent_Identity=25.0950570342205, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789506, Length=220, Percent_Identity=24.0909090909091, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=24.6031746031746, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=27.7456647398844, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34661; Mature: 34530

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRRLQVFYTVAKQLSFTKAADILYMTQPAVTFQVKQLEEHFNTRLFERSHGKISLTPA
CCCCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC
GELVLGYAERILALSGEMEARVGELTGQVTGPLMIGASTTIAEYQLPRILGEFKERFPQV
CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCHHH
QARLTVANSETVAAKVADHSLDVGLIEAPSHNPNLTTVACCEDELVMICAPAHTLATRSN
EEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCHHHHHCCC
VSAREIADQRYVSREHGSGTREVVDDFFKDHGVNPDDLHIEMELGSREAIKGAVEAGLGV
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCE
AIMSASTVTKEIQLGTLVAVPLNPRLTRELSMVYAPEKFRSKLLDAFISFVENKFQQCNI
EEEEHHHHHHEEEECEEEEECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCC
DVAPFRRPFKGRAR
CHHCCCCCCCCCCC
>Mature Secondary Structure 
ADRRLQVFYTVAKQLSFTKAADILYMTQPAVTFQVKQLEEHFNTRLFERSHGKISLTPA
CCCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC
GELVLGYAERILALSGEMEARVGELTGQVTGPLMIGASTTIAEYQLPRILGEFKERFPQV
CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCHHH
QARLTVANSETVAAKVADHSLDVGLIEAPSHNPNLTTVACCEDELVMICAPAHTLATRSN
EEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCHHHHHCCC
VSAREIADQRYVSREHGSGTREVVDDFFKDHGVNPDDLHIEMELGSREAIKGAVEAGLGV
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCE
AIMSASTVTKEIQLGTLVAVPLNPRLTRELSMVYAPEKFRSKLLDAFISFVENKFQQCNI
EEEEHHHHHHEEEECEEEEECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCC
DVAPFRRPFKGRAR
CHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]