Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 74317715

GI number: 74317715

Start: 1788416

End: 1789261

Strand: Direct

Name: crtB [H]

Synonym: Tbd_1697

Alternate gene names: 74317715

Gene position: 1788416-1789261 (Clockwise)

Preceding gene: 74317714

Following gene: 74317716

Centisome position: 61.46

GC content: 68.44

Gene sequence:

>846_bases
ATGGACGCGCATCGCTACTGCCAGGAGCGCGCCGCCGCAAGCGGCTCCAGCTTCTACTACAGTTTCGTCTTCCTGCCGAC
CGAAGTGCGCCGCGCGATTACTGCGTTCTACGCACTGTGCCGCGAGCTCGACGACGTCGTCGACGAATGCCACGAGCGCC
AGTTGGCCGAACTCAAGCTCGCCTGGTGGCGGGAGGAAATCGGCCGCTTTGCCGCAGGCGCGGCGACCCACCCCGCGACC
CGCGCACTCGCCGACACCGCGCGGGGAGCGAGCGTCCAACCCGCGCTACTGCTGGAAATCGTCGACGGCATGGCGATGGA
TCTCGAGCACGCCCGCTACGCCGACTTCCGCGCGCTCAAACTCTATTGCCATCGGGCGGCCAGCGTCGTCGGCGAAATCG
CCGCCGGCATCTTCGAGGGCGCGCGCGGCGAGCACGACCGCGAAGTCCGCCGCTACGCGCACGAACTCGGACTCGCCTTC
CAGCTGACGAACATCATCCGCGACGTCGGGGAAGACGCGCGACGCGGCCGCATCTATCTCCCGCTCGACGAAATGGCGCG
CTTCGGCGTCGCCGAGGCCGACGTGCTTGAAGGCCGCGACACCCCCGCGTTTCGGGCCCTGATGCAGTTTCAATACGAGC
GGGCGGTCGCGCATTACGAGCGCGCACTCGCCACGCTGCCGAGCGCCGCGCGGCGGGCCCAACGTCCCGGCCTCGTGATG
GCCGCGATCTACCGCAGCCTGCTGGATGAAATCCGCCGCGACGGCTTTCCGGTTTTGCGCGCGCGCATCGCACTGACGCC
CTTGCGCAAGCTTTGGCTCGCCAGCCGCACCTGGCTCTTTCCATGA

Upstream 100 bases:

>100_bases
TGCGCAAGCTTCACGCCGATCCGGGCTGCGTGTTCGGTGCACGTCCCGTCCTCGGCAAGAGGGACTGGATCGTCATGCTC
GCGCGCAGCGTTCTCTGAAG

Downstream 100 bases:

>100_bases
CGCCGGACGTCGCGGTGGTCGGCGGCGGCTGGGCAGGCTGCGCCGCGGCGCTCACGCTGGCCGAAGCGGGCGTGCCGGTC
ACGCTCTACGAAGCCGGGCG

Product: farnesyl-diphosphate farnesyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MDAHRYCQERAAASGSSFYYSFVFLPTEVRRAITAFYALCRELDDVVDECHERQLAELKLAWWREEIGRFAAGAATHPAT
RALADTARGASVQPALLLEIVDGMAMDLEHARYADFRALKLYCHRAASVVGEIAAGIFEGARGEHDREVRRYAHELGLAF
QLTNIIRDVGEDARRGRIYLPLDEMARFGVAEADVLEGRDTPAFRALMQFQYERAVAHYERALATLPSAARRAQRPGLVM
AAIYRSLLDEIRRDGFPVLRARIALTPLRKLWLASRTWLFP

Sequences:

>Translated_281_residues
MDAHRYCQERAAASGSSFYYSFVFLPTEVRRAITAFYALCRELDDVVDECHERQLAELKLAWWREEIGRFAAGAATHPAT
RALADTARGASVQPALLLEIVDGMAMDLEHARYADFRALKLYCHRAASVVGEIAAGIFEGARGEHDREVRRYAHELGLAF
QLTNIIRDVGEDARRGRIYLPLDEMARFGVAEADVLEGRDTPAFRALMQFQYERAVAHYERALATLPSAARRAQRPGLVM
AAIYRSLLDEIRRDGFPVLRARIALTPLRKLWLASRTWLFP
>Mature_281_residues
MDAHRYCQERAAASGSSFYYSFVFLPTEVRRAITAFYALCRELDDVVDECHERQLAELKLAWWREEIGRFAAGAATHPAT
RALADTARGASVQPALLLEIVDGMAMDLEHARYADFRALKLYCHRAASVVGEIAAGIFEGARGEHDREVRRYAHELGLAF
QLTNIIRDVGEDARRGRIYLPLDEMARFGVAEADVLEGRDTPAFRALMQFQYERAVAHYERALATLPSAARRAQRPGLVM
AAIYRSLLDEIRRDGFPVLRARIALTPLRKLWLASRTWLFP

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 31799; Mature: 31799

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHRYCQERAAASGSSFYYSFVFLPTEVRRAITAFYALCRELDDVVDECHERQLAELKL
CCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWWREEIGRFAAGAATHPATRALADTARGASVQPALLLEIVDGMAMDLEHARYADFRALK
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYCHRAASVVGEIAAGIFEGARGEHDREVRRYAHELGLAFQLTNIIRDVGEDARRGRIYL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEEEE
PLDEMARFGVAEADVLEGRDTPAFRALMQFQYERAVAHYERALATLPSAARRAQRPGLVM
EHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AAIYRSLLDEIRRDGFPVLRARIALTPLRKLWLASRTWLFP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDAHRYCQERAAASGSSFYYSFVFLPTEVRRAITAFYALCRELDDVVDECHERQLAELKL
CCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWWREEIGRFAAGAATHPATRALADTARGASVQPALLLEIVDGMAMDLEHARYADFRALK
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYCHRAASVVGEIAAGIFEGARGEHDREVRRYAHELGLAFQLTNIIRDVGEDARRGRIYL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEEEE
PLDEMARFGVAEADVLEGRDTPAFRALMQFQYERAVAHYERALATLPSAARRAQRPGLVM
EHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AAIYRSLLDEIRRDGFPVLRARIALTPLRKLWLASRTWLFP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA