| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is lon [H]
Identifier: 74317693
GI number: 74317693
Start: 1761469
End: 1763886
Strand: Reverse
Name: lon [H]
Synonym: Tbd_1675
Alternate gene names: 74317693
Gene position: 1763886-1761469 (Counterclockwise)
Preceding gene: 74317694
Following gene: 74317692
Centisome position: 60.62
GC content: 62.41
Gene sequence:
>2418_bases ATGATGAGCGACAACGTATCCACGGAAGAGATCGATCTGCCACTGTTGCCGCTTAGGGACGTGGTGGTGTTCCCGCATAT GGTCATCCCCTTGTTCGTGGGGCGGCCGAAGTCGATCAAGGCGCTGGAAACCTCGATGGAATCCGGCAAGAGCATCCTCC TCGTCGCGCAAAAAACGGCAGCGCAGGACGACCCGACCCCCGACGACCTCTACGACACCGGCAGCGTCGCCACCGTGCTG CAGATGCTGAAACTGCCCGACGGTACCGTGAAGGTGCTGGTCGAAGGCAATCAGCGCGCGCGCGTGCTCAACGTCGCGGA TACGGGCACGCATCTGAGCGCGCGCGCGCGCATCCTGCCCGCGGAAGGCGAGGAGTTGGTCGAAGTCGAGGCGATGCGTC GCGCGCTCCTCACCCAGTTCGATCAGTACGTCAAACTGAACAAGAAGATCCCGCCGGAAATCCTGACCTCGCTTTCGGGG ATCGACGAGGGCGGGCGCCTGGCCGACACCATCGTCGCGCACCTGCCGCTCAAGCTCGAGCAGAAGCAGGAAGTGCTCGA GATGATCGGCGTCAACAAGCGGCTCGAGCATCTGCTCGGCCTGCTCGAGGGCGAGCTCGACATTCTCCAGGTCGAAAAGC GGATCCGTGGCCGCGTCAAGCGGCAGATGGAGAAGAGCCAGCGCGAGTACTACCTGAACGAGCAGGTCAAGGCGATTCAG AAAGAGCTCGGCGACATCGAGGAAGGCGCTGAGCTGGAAGAGCTCGACAAGCGAATCCGGCAGGCGAGCATGTCCAAGGA AGCCGAGGCCAAGGCGCTCGGCGAACTGAAGAAGCTGCGTATGATGTCGCCGATGTCGGCGGAGGCGACTGTGATCCGCA GCTACATCGAAGCCATGGTCGGGCTGCCGTGGAAAAAGAAAACCAAGATCAGCAAGGACCTGGCGAAGGCCGAGAAAGTG CTCGATCAGGATCACTACGGTCTCGACAAGGTCAAGGAACGCATCCTCGAATATCTCGCCGTGCAGCAGCGCGTCGACAA GGTCAAGGCGCCGATCCTGTGTCTGGTCGGGCCGCCCGGTGTCGGCAAGACCTCGCTCGGGCAGTCGATCGCGCGGGCGA CCAACCGTAAGTTCGTGCGCATGGCGCTCGGCGGCGTACGTGATGAATCCGAGATCCGCGGCCACCGCCGCACCTACATC GGATCGATGCCCGGCAAGATCCTGCAGAGCCTGACCAAGGTCGGCGTGAAGAACCCGCTATTCCTGCTCGACGAGGTCGA CAAGATGGGACAGGACTTCCGCGGAGACCCGTCGTCGGCCCTGCTTGAGGTGCTCGATCCGGAGCAGAACCACACCTTCC AGGATCACTACGTCGAGGTCGAATACGACCTGTCGGACGTGATGTTCGTCGCGACCGCGAACTCGCTCAATCTGCCCGCG CCGCTGCTCGATCGGATGGAAGTGATCCGCCTTTCGGGTTACACCGAAGACGAGAAGATCAATATCGCCGAGCGTTACCT GGTGCCCAAGCAACTCAAGGTCAACGGCATCAAGGACGGCGAGCTTTCGATCGCCGAGTCGGCCATTCGTGACATCGTCC GTTACTACACGCGGGAAGCCGGCGTGCGCAGCCTCGAGCGCGAAATATCCAAGGTCTGCCGCAAGGCGGTCAAGGCGCTT CTGCTCAAGCGGCAAAGCACGAAAATCGCCGTCACCTCGCGCAACCTGGAGAAGTATCTCGGTGTCCGTCGCTTCAGCTT CGGGGTCGCGGAGAAGAACAACCAGGTTGGACAGGTCACGGGCCTTGCCTGGACCGAGGTCGGCGGCGAACTGCTGACGA TCGAAGCCGTGGCCCTGCCCGGGCGCGGCAAGATGACGACCACCGGCAAGCTCGGCGAAGTCATGCAGGAGTCGATCCAG GCTGCGCTCTCGGTCGTGCGGTCGCGCTCGCGCAAGTTGGGAATCCAGGAGGATTTCTATCAGAAGCGCGATATCCACAT CCACCTGCCGGAAGGCGCGACGCCGAAAGACGGCCCCTCGGCCGGCATTGCAATCTGTACGTCGATGGTCTCGATCCTCA CCGGAATCCCGGTGCGCGCCGATGTCGCGATGACCGGCGAGATCACGCTACGGGGCGAGGTGCTGCCGATCGGCGGGCTG AAGGAGAAGCTGCTCGCCGCGCATCGTGGCGGCATCAAGACGGTGTTGATCCCGCAGGAGAACGTCAAGGACCTCACCGA CATTCCCGACAACATCAAGAACAAGCTCGACATCCATCCCGTCAAGTGGATCGATCAGGTGCTCGAACTCGCGCTCGAAC ATGTGCCCGAGCCGCTGAGCGAGGAATCGGAGTCGGAAACCCCCGCGATCGCGGTTTCCGAGGAGGGCGGCACGGCCGCA AGGGCGCTGAAACACTAG
Upstream 100 bases:
>100_bases GGAACCAGTCGGCCATCTTGAATTCCAAACTATGCCCCCCAACTGGGACAAGCGTGGTTGACATGCCGCGCGTCCTTTCC CCAACCCTTGCCAGGAAATC
Downstream 100 bases:
>100_bases GTTTCCCGCGACACATCGCCACGAATCCCGCGCCAGTCGCGGGATTTTTCATTGAGGTCCCCGGAAAACCGCTTGACACA AGGTTTTTCACGTTGCTATA
Product: Lon-A peptidase
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MMSDNVSTEEIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALETSMESGKSILLVAQKTAAQDDPTPDDLYDTGSVATVL QMLKLPDGTVKVLVEGNQRARVLNVADTGTHLSARARILPAEGEELVEVEAMRRALLTQFDQYVKLNKKIPPEILTSLSG IDEGGRLADTIVAHLPLKLEQKQEVLEMIGVNKRLEHLLGLLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ KELGDIEEGAELEELDKRIRQASMSKEAEAKALGELKKLRMMSPMSAEATVIRSYIEAMVGLPWKKKTKISKDLAKAEKV LDQDHYGLDKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDESEIRGHRRTYI GSMPGKILQSLTKVGVKNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFQDHYVEVEYDLSDVMFVATANSLNLPA PLLDRMEVIRLSGYTEDEKINIAERYLVPKQLKVNGIKDGELSIAESAIRDIVRYYTREAGVRSLEREISKVCRKAVKAL LLKRQSTKIAVTSRNLEKYLGVRRFSFGVAEKNNQVGQVTGLAWTEVGGELLTIEAVALPGRGKMTTTGKLGEVMQESIQ AALSVVRSRSRKLGIQEDFYQKRDIHIHLPEGATPKDGPSAGIAICTSMVSILTGIPVRADVAMTGEITLRGEVLPIGGL KEKLLAAHRGGIKTVLIPQENVKDLTDIPDNIKNKLDIHPVKWIDQVLELALEHVPEPLSEESESETPAIAVSEEGGTAA RALKH
Sequences:
>Translated_805_residues MMSDNVSTEEIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALETSMESGKSILLVAQKTAAQDDPTPDDLYDTGSVATVL QMLKLPDGTVKVLVEGNQRARVLNVADTGTHLSARARILPAEGEELVEVEAMRRALLTQFDQYVKLNKKIPPEILTSLSG IDEGGRLADTIVAHLPLKLEQKQEVLEMIGVNKRLEHLLGLLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ KELGDIEEGAELEELDKRIRQASMSKEAEAKALGELKKLRMMSPMSAEATVIRSYIEAMVGLPWKKKTKISKDLAKAEKV LDQDHYGLDKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDESEIRGHRRTYI GSMPGKILQSLTKVGVKNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFQDHYVEVEYDLSDVMFVATANSLNLPA PLLDRMEVIRLSGYTEDEKINIAERYLVPKQLKVNGIKDGELSIAESAIRDIVRYYTREAGVRSLEREISKVCRKAVKAL LLKRQSTKIAVTSRNLEKYLGVRRFSFGVAEKNNQVGQVTGLAWTEVGGELLTIEAVALPGRGKMTTTGKLGEVMQESIQ AALSVVRSRSRKLGIQEDFYQKRDIHIHLPEGATPKDGPSAGIAICTSMVSILTGIPVRADVAMTGEITLRGEVLPIGGL KEKLLAAHRGGIKTVLIPQENVKDLTDIPDNIKNKLDIHPVKWIDQVLELALEHVPEPLSEESESETPAIAVSEEGGTAA RALKH >Mature_805_residues MMSDNVSTEEIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALETSMESGKSILLVAQKTAAQDDPTPDDLYDTGSVATVL QMLKLPDGTVKVLVEGNQRARVLNVADTGTHLSARARILPAEGEELVEVEAMRRALLTQFDQYVKLNKKIPPEILTSLSG IDEGGRLADTIVAHLPLKLEQKQEVLEMIGVNKRLEHLLGLLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ KELGDIEEGAELEELDKRIRQASMSKEAEAKALGELKKLRMMSPMSAEATVIRSYIEAMVGLPWKKKTKISKDLAKAEKV LDQDHYGLDKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDESEIRGHRRTYI GSMPGKILQSLTKVGVKNPLFLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFQDHYVEVEYDLSDVMFVATANSLNLPA PLLDRMEVIRLSGYTEDEKINIAERYLVPKQLKVNGIKDGELSIAESAIRDIVRYYTREAGVRSLEREISKVCRKAVKAL LLKRQSTKIAVTSRNLEKYLGVRRFSFGVAEKNNQVGQVTGLAWTEVGGELLTIEAVALPGRGKMTTTGKLGEVMQESIQ AALSVVRSRSRKLGIQEDFYQKRDIHIHLPEGATPKDGPSAGIAICTSMVSILTGIPVRADVAMTGEITLRGEVLPIGGL KEKLLAAHRGGIKTVLIPQENVKDLTDIPDNIKNKLDIHPVKWIDQVLELALEHVPEPLSEESESETPAIAVSEEGGTAA RALKH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=832, Percent_Identity=38.7019230769231, Blast_Score=526, Evalue=1e-149, Organism=Homo sapiens, GI21396489, Length=827, Percent_Identity=35.7920193470375, Blast_Score=501, Evalue=1e-141, Organism=Escherichia coli, GI1786643, Length=770, Percent_Identity=69.4805194805195, Blast_Score=1102, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=680, Percent_Identity=40.1470588235294, Blast_Score=485, Evalue=1e-137, Organism=Caenorhabditis elegans, GI17556486, Length=630, Percent_Identity=37.6190476190476, Blast_Score=432, Evalue=1e-121, Organism=Saccharomyces cerevisiae, GI6319449, Length=717, Percent_Identity=38.3542538354254, Blast_Score=498, Evalue=1e-141, Organism=Drosophila melanogaster, GI221513036, Length=626, Percent_Identity=43.7699680511182, Blast_Score=500, Evalue=1e-141, Organism=Drosophila melanogaster, GI24666867, Length=626, Percent_Identity=43.6102236421725, Blast_Score=500, Evalue=1e-141,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 89142; Mature: 89142
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSDNVSTEEIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALETSMESGKSILLVAQKTA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHC AQDDPTPDDLYDTGSVATVLQMLKLPDGTVKVLVEGNQRARVLNVADTGTHLSARARILP CCCCCCCCHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEC AEGEELVEVEAMRRALLTQFDQYVKLNKKIPPEILTSLSGIDEGGRLADTIVAHLPLKLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHH QKQEVLEMIGVNKRLEHLLGLLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KELGDIEEGAELEELDKRIRQASMSKEAEAKALGELKKLRMMSPMSAEATVIRSYIEAMV HHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH GLPWKKKTKISKDLAKAEKVLDQDHYGLDKVKERILEYLAVQQRVDKVKAPILCLVGPPG CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC VGKTSLGQSIARATNRKFVRMALGGVRDESEIRGHRRTYIGSMPGKILQSLTKVGVKNPL CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCH FLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFQDHYVEVEYDLSDVMFVATANSLNLPA HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCH PLLDRMEVIRLSGYTEDEKINIAERYLVPKQLKVNGIKDGELSIAESAIRDIVRYYTREA HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHH GVRSLEREISKVCRKAVKALLLKRQSTKIAVTSRNLEKYLGVRRFSFGVAEKNNQVGQVT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHCCCCCCCCCCEEEE GLAWTEVGGELLTIEAVALPGRGKMTTTGKLGEVMQESIQAALSVVRSRSRKLGIQEDFY CEEHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH QKRDIHIHLPEGATPKDGPSAGIAICTSMVSILTGIPVRADVAMTGEITLRGEVLPIGGL CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCCH KEKLLAAHRGGIKTVLIPQENVKDLTDIPDNIKNKLDIHPVKWIDQVLELALEHVPEPLS HHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC EESESETPAIAVSEEGGTAARALKH CCCCCCCCEEEEECCCCHHHHHHCC >Mature Secondary Structure MMSDNVSTEEIDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALETSMESGKSILLVAQKTA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHC AQDDPTPDDLYDTGSVATVLQMLKLPDGTVKVLVEGNQRARVLNVADTGTHLSARARILP CCCCCCCCHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEC AEGEELVEVEAMRRALLTQFDQYVKLNKKIPPEILTSLSGIDEGGRLADTIVAHLPLKLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCHH QKQEVLEMIGVNKRLEHLLGLLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KELGDIEEGAELEELDKRIRQASMSKEAEAKALGELKKLRMMSPMSAEATVIRSYIEAMV HHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH GLPWKKKTKISKDLAKAEKVLDQDHYGLDKVKERILEYLAVQQRVDKVKAPILCLVGPPG CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC VGKTSLGQSIARATNRKFVRMALGGVRDESEIRGHRRTYIGSMPGKILQSLTKVGVKNPL CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCH FLLDEVDKMGQDFRGDPSSALLEVLDPEQNHTFQDHYVEVEYDLSDVMFVATANSLNLPA HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCH PLLDRMEVIRLSGYTEDEKINIAERYLVPKQLKVNGIKDGELSIAESAIRDIVRYYTREA HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHH GVRSLEREISKVCRKAVKALLLKRQSTKIAVTSRNLEKYLGVRRFSFGVAEKNNQVGQVT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHCCCCCCCCCCEEEE GLAWTEVGGELLTIEAVALPGRGKMTTTGKLGEVMQESIQAALSVVRSRSRKLGIQEDFY CEEHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH QKRDIHIHLPEGATPKDGPSAGIAICTSMVSILTGIPVRADVAMTGEITLRGEVLPIGGL CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCCH KEKLLAAHRGGIKTVLIPQENVKDLTDIPDNIKNKLDIHPVKWIDQVLELALEHVPEPLS HHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC EESESETPAIAVSEEGGTAARALKH CCCCCCCCEEEEECCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]