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The map label for this gene is rpoE [H]

Identifier: 74317672

GI number: 74317672

Start: 1737191

End: 1737688

Strand: Reverse

Name: rpoE [H]

Synonym: Tbd_1654

Alternate gene names: 74317672

Gene position: 1737688-1737191 (Counterclockwise)

Preceding gene: 74317673

Following gene: 74317671

Centisome position: 59.72

GC content: 66.47

Gene sequence:

>498_bases
GTGCGTGCCCGTTCCGACCTGATCGAGCACTTGCCCCGTCTCCGCCGGTACGCGCGGGCGTTGACGGGCGACGCCAGTCG
CGCCGACGACCTCGTGCAGGACACGATGGAACGTGCGCTGGTCAAGCTCGATCTGTGGAAGCCCGGCACCGACCTGCGCG
CGTGGTTGTTTACCGTGATGCACAATCTTTACGTAAACCAGGCGCGCAGCCTTCGGCCACCGGGCCCGGCGATCGAGGAT
CTGCCGGACAAGCCGGTCAGCGGCGGGCAGATGGAGGCGCTGACCGCGCGCGACATCCGAGATGCGCTGGCGAAGCTTCC
CGAAGAACAGCGTGCGGTCCTGCTTCTCGTCGGACTCGAACAGTTCAGCTACGCTGAAGCCGCCCGGGTGATCGGGGTGC
CGACCGGTACCGTGATGTCACGTCTGGCGCGGGCGCGCGAACGCATGCGCCGGATGCTCACGGGCGAACCCGTCGTCAAT
CTGAAAGCCGTGAAATGA

Upstream 100 bases:

>100_bases
CTATAAGGGCAAGCCGCTTTACCTGTGGAGCAAGGACGTCAAGCCGGGCGACACGACCGGCGACGGGGTCAACAACGTCT
GGCATGCCGTCAAACCCTGA

Downstream 100 bases:

>100_bases
ACGAAAACGTGCGTGAAGACGAACTTCATGCCTATGTGGACGGCGCGCTGGACGAGGCGCGCCGTCTCGAGGTCGAGGCG
TGGCTTGCCGCGCATCCGGC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MRARSDLIEHLPRLRRYARALTGDASRADDLVQDTMERALVKLDLWKPGTDLRAWLFTVMHNLYVNQARSLRPPGPAIED
LPDKPVSGGQMEALTARDIRDALAKLPEEQRAVLLLVGLEQFSYAEAARVIGVPTGTVMSRLARARERMRRMLTGEPVVN
LKAVK

Sequences:

>Translated_165_residues
MRARSDLIEHLPRLRRYARALTGDASRADDLVQDTMERALVKLDLWKPGTDLRAWLFTVMHNLYVNQARSLRPPGPAIED
LPDKPVSGGQMEALTARDIRDALAKLPEEQRAVLLLVGLEQFSYAEAARVIGVPTGTVMSRLARARERMRRMLTGEPVVN
LKAVK
>Mature_165_residues
MRARSDLIEHLPRLRRYARALTGDASRADDLVQDTMERALVKLDLWKPGTDLRAWLFTVMHNLYVNQARSLRPPGPAIED
LPDKPVSGGQMEALTARDIRDALAKLPEEQRAVLLLVGLEQFSYAEAARVIGVPTGTVMSRLARARERMRRMLTGEPVVN
LKAVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18538; Mature: 18538

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARSDLIEHLPRLRRYARALTGDASRADDLVQDTMERALVKLDLWKPGTDLRAWLFTVM
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HNLYVNQARSLRPPGPAIEDLPDKPVSGGQMEALTARDIRDALAKLPEEQRAVLLLVGLE
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHEEHEECHH
QFSYAEAARVIGVPTGTVMSRLARARERMRRMLTGEPVVNLKAVK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MRARSDLIEHLPRLRRYARALTGDASRADDLVQDTMERALVKLDLWKPGTDLRAWLFTVM
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HNLYVNQARSLRPPGPAIEDLPDKPVSGGQMEALTARDIRDALAKLPEEQRAVLLLVGLE
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHEEHEECHH
QFSYAEAARVIGVPTGTVMSRLARARERMRRMLTGEPVVNLKAVK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]