| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74317596
Identifier: 74317596
GI number: 74317596
Start: 1661874
End: 1663463
Strand: Direct
Name: 74317596
Synonym: Tbd_1578
Alternate gene names: NA
Gene position: 1661874-1663463 (Clockwise)
Preceding gene: 74317595
Following gene: 74317597
Centisome position: 57.11
GC content: 72.08
Gene sequence:
>1590_bases ATGAGCGCCGTCCTCGCCCCCGCCTCGCCGTGGGCTCCGCTGCGCAATCGCGTCTTCCGCATGATGTGGATCGCATCGCT CGCGTCGAACATCGGCACCTGGATGCACGAGGTCGGCGCGGGCTGGCTCATGACCTCGCTCGCGCCCGACCCGCTCATGG TCGCGCTCGTACAGGCGGCGGCGACGGCACCGGTATTCCTGCTCGCGCTGCCGGCCGGCGCGCTCGCCGACATCGTCGAC CGCCGCCGCTACCTGATCGTCTCGCAGCTGTGGATGCTCGTGGCGGCGACGCTGCTCGGCGTGTTCACGCTCGCGGGGGC CACCAACGCCGCGCTGCTGTTGCTCTTCACCTTCGCGCTCGGCGTCGGCCGGGCGATGATGATGCCGGCCTGGGGCGCGG TCGTACCCGAGCTCGTGCCGCGATCCGAACTTGCGTCGGCGATCGCGCTGAACTCGATGGGCATGAACGCAGCGCGTTCG ATGGGCCCCGCGCTCGCCGGCCTGATCGTCGCGTCGGCCGGACCCGGCGCGGTGTTCATGCTCAATGCGCTGTCGTTCCT CGCCGTCATCGCCGCCTTGAAGACCTGGCAGCGCGCGCCGCAGCCGAGCGAATTGCCGGCCGAGCGTCTGCTCGGCGCCG TGCGCGCGGGCCTGCGCTACGCCCGCCACTCGCCCGAACTGCGCGCCGTGCTCGTGCGCGAAGCGGCCTTCTTCGTGTTC GCGAGCGCCGCCTGGGCCTTGTTGCCGCTCATCGTCAGGCAGGAGCTGCAGGCCGGCCCGCGCACCTACGGGCTCTTTCT CGCCTGCATGGGCGTCGGCGCGGTCACCGGCGCGCTGCTGCTGCCGCGACTCCACGCGCGCGCCTCGCGTGACCGCGTCG TCGCCGGCGCGACTGTGCTGCACGCGCTTGCCCTGCTCGCGCTCGCCCACAGCGGCAGCCTCGTCGCCGCGGGCGCGGCG ATGGTGCTGATCGGCATCGCCTGGATCAGCGTCGTCTCCTCGCTCATGACCGCGGCGCAGACCGCCCTGCCACGCTGGGT GCGCGCGCGCGGACTCGCGCTTTTCTGGGTGTTTTTCACGGGCGGGATGGCCGCCGGCAGCACGCTCTGGGGTCAGGTCG CCTCGTCGACGGACATTCCGACCGCGCTCACGGCGGCGGCCATCGGCGCGCTCGCCGGCATCGTGCTCACGCGTCGATAC CACATTGGCCGCCACGATGTCGCCGACCTCTCGCCCTCGCAGCACTGGCCGAACCCGACCGGCCACGACGACGTCGGCCG CGACCGCGGGCCGGTCATGGTGACCGTCGAGTACCGGATCGATCCCGCGCGCGCGACCGAATTCACCCGGCTCCTCCAGC GCGTGCGCCGCATTCGCCGGCGCGACGGCGCGTTCATGTGGGAACTCTTCAGCGACGTCGCCGAGCCGGGGCGCATGCTC GAATGTTTCATGGTCGAATCCTGGCTCGAGCACCTGCGCCAGCACGAGCGCGTCACCGTCGCCGACCGCGAATTGCTCGA AGCGGCGCGCGCCTTCCACCTCGGCGACGCGCCGCCGGTCGTCACGCATCTCGTCGCCGAGACGCGCTGA
Upstream 100 bases:
>100_bases CACGGGTGGTCGTTCGAAGCGGGGGTGCCGCGGTGCTTCCCGGCTTGCCGCGCGCTGCATCGCGCCAAACACGAGCGCGG CGGCACCTGACCCTGCGCAC
Downstream 100 bases:
>100_bases CGCCGTGGTGCCGATTCACGAGCTCCTCAACCGCCTGCGCTGGGACCCGGCGTTCGCCCGAGGCGGCTTCGTCCTCGGCT ACTACGATCGCGTCGCCGAC
Product: MFS family transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; MFS Permease; MFS Family Transporter; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; Multidrug ABC Transporter; MFS Transporter; Transmembrane Efflux Protein; Permease; Mfs Transporter; Transporter Facilitator Family; Facilitator Superfamily; Arabinose Efflux Permease Family Protein; Transport Transmembrane Protein; Permeases Of Facilitator Superfamily; MFS Family Transporter Protein; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; ABC Transporter Permease Protein; Facilitator Transpoter; MFS Family Membrane Efflux Protein; Macrolide-Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Dioxygenase; MFS Family Diterpenoid Transporter; Drug Resistance Efflux Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSAVLAPASPWAPLRNRVFRMMWIASLASNIGTWMHEVGAGWLMTSLAPDPLMVALVQAAATAPVFLLALPAGALADIVD RRRYLIVSQLWMLVAATLLGVFTLAGATNAALLLLFTFALGVGRAMMMPAWGAVVPELVPRSELASAIALNSMGMNAARS MGPALAGLIVASAGPGAVFMLNALSFLAVIAALKTWQRAPQPSELPAERLLGAVRAGLRYARHSPELRAVLVREAAFFVF ASAAWALLPLIVRQELQAGPRTYGLFLACMGVGAVTGALLLPRLHARASRDRVVAGATVLHALALLALAHSGSLVAAGAA MVLIGIAWISVVSSLMTAAQTALPRWVRARGLALFWVFFTGGMAAGSTLWGQVASSTDIPTALTAAAIGALAGIVLTRRY HIGRHDVADLSPSQHWPNPTGHDDVGRDRGPVMVTVEYRIDPARATEFTRLLQRVRRIRRRDGAFMWELFSDVAEPGRML ECFMVESWLEHLRQHERVTVADRELLEAARAFHLGDAPPVVTHLVAETR
Sequences:
>Translated_529_residues MSAVLAPASPWAPLRNRVFRMMWIASLASNIGTWMHEVGAGWLMTSLAPDPLMVALVQAAATAPVFLLALPAGALADIVD RRRYLIVSQLWMLVAATLLGVFTLAGATNAALLLLFTFALGVGRAMMMPAWGAVVPELVPRSELASAIALNSMGMNAARS MGPALAGLIVASAGPGAVFMLNALSFLAVIAALKTWQRAPQPSELPAERLLGAVRAGLRYARHSPELRAVLVREAAFFVF ASAAWALLPLIVRQELQAGPRTYGLFLACMGVGAVTGALLLPRLHARASRDRVVAGATVLHALALLALAHSGSLVAAGAA MVLIGIAWISVVSSLMTAAQTALPRWVRARGLALFWVFFTGGMAAGSTLWGQVASSTDIPTALTAAAIGALAGIVLTRRY HIGRHDVADLSPSQHWPNPTGHDDVGRDRGPVMVTVEYRIDPARATEFTRLLQRVRRIRRRDGAFMWELFSDVAEPGRML ECFMVESWLEHLRQHERVTVADRELLEAARAFHLGDAPPVVTHLVAETR >Mature_528_residues SAVLAPASPWAPLRNRVFRMMWIASLASNIGTWMHEVGAGWLMTSLAPDPLMVALVQAAATAPVFLLALPAGALADIVDR RRYLIVSQLWMLVAATLLGVFTLAGATNAALLLLFTFALGVGRAMMMPAWGAVVPELVPRSELASAIALNSMGMNAARSM GPALAGLIVASAGPGAVFMLNALSFLAVIAALKTWQRAPQPSELPAERLLGAVRAGLRYARHSPELRAVLVREAAFFVFA SAAWALLPLIVRQELQAGPRTYGLFLACMGVGAVTGALLLPRLHARASRDRVVAGATVLHALALLALAHSGSLVAAGAAM VLIGIAWISVVSSLMTAAQTALPRWVRARGLALFWVFFTGGMAAGSTLWGQVASSTDIPTALTAAAIGALAGIVLTRRYH IGRHDVADLSPSQHWPNPTGHDDVGRDRGPVMVTVEYRIDPARATEFTRLLQRVRRIRRRDGAFMWELFSDVAEPGRMLE CFMVESWLEHLRQHERVTVADRELLEAARAFHLGDAPPVVTHLVAETR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56647; Mature: 56516
Theoretical pI: Translated: 11.42; Mature: 11.42
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVLAPASPWAPLRNRVFRMMWIASLASNIGTWMHEVGAGWLMTSLAPDPLMVALVQAA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH ATAPVFLLALPAGALADIVDRRRYLIVSQLWMLVAATLLGVFTLAGATNAALLLLFTFAL HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GVGRAMMMPAWGAVVPELVPRSELASAIALNSMGMNAARSMGPALAGLIVASAGPGAVFM HHCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHH LNALSFLAVIAALKTWQRAPQPSELPAERLLGAVRAGLRYARHSPELRAVLVREAAFFVF HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH ASAAWALLPLIVRQELQAGPRTYGLFLACMGVGAVTGALLLPRLHARASRDRVVAGATVL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH HALALLALAHSGSLVAAGAAMVLIGIAWISVVSSLMTAAQTALPRWVRARGLALFWVFFT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGMAAGSTLWGQVASSTDIPTALTAAAIGALAGIVLTRRYHIGRHDVADLSPSQHWPNPT CCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GHDDVGRDRGPVMVTVEYRIDPARATEFTRLLQRVRRIRRRDGAFMWELFSDVAEPGRML CCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHH ECFMVESWLEHLRQHERVTVADRELLEAARAFHLGDAPPVVTHLVAETR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC >Mature Secondary Structure SAVLAPASPWAPLRNRVFRMMWIASLASNIGTWMHEVGAGWLMTSLAPDPLMVALVQAA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH ATAPVFLLALPAGALADIVDRRRYLIVSQLWMLVAATLLGVFTLAGATNAALLLLFTFAL HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH GVGRAMMMPAWGAVVPELVPRSELASAIALNSMGMNAARSMGPALAGLIVASAGPGAVFM HHCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHH LNALSFLAVIAALKTWQRAPQPSELPAERLLGAVRAGLRYARHSPELRAVLVREAAFFVF HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH ASAAWALLPLIVRQELQAGPRTYGLFLACMGVGAVTGALLLPRLHARASRDRVVAGATVL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH HALALLALAHSGSLVAAGAAMVLIGIAWISVVSSLMTAAQTALPRWVRARGLALFWVFFT HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGMAAGSTLWGQVASSTDIPTALTAAAIGALAGIVLTRRYHIGRHDVADLSPSQHWPNPT CCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GHDDVGRDRGPVMVTVEYRIDPARATEFTRLLQRVRRIRRRDGAFMWELFSDVAEPGRML CCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHH ECFMVESWLEHLRQHERVTVADRELLEAARAFHLGDAPPVVTHLVAETR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA