| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is rne [H]
Identifier: 74317582
GI number: 74317582
Start: 1646206
End: 1648827
Strand: Direct
Name: rne [H]
Synonym: Tbd_1564
Alternate gene names: 74317582
Gene position: 1646206-1648827 (Clockwise)
Preceding gene: 74317576
Following gene: 74317585
Centisome position: 56.57
GC content: 69.03
Gene sequence:
>2622_bases ATGAAGCGCATGCTTTTCAACGCAACCCAGGCGGAAGAACTCCGGGTTGCCATCGTCGACGGGCAAAAGCTCGTCGACCT TGACATCGAGTCCGCCAGCAAGGAACAACGCAAGGGCAACATCTACAAGGGTGTCGTCACCCGCGTCGAGCCCAGCCTCG AGGCCGCGTTCGTCGACTATGGCTGCGAGCGCCACGGCTTCCTGCCGTTCAAGGAAATCGCCCGCTCGTGTCTGCCCAAT GGCGGCCGCGTCCCCGAGAACCTCAAGGAAGGCCAGGAACTGCTGGTCCAGGTCGAGAAGGACGAGCGCGGCAACAAGGG CGCAGCACTGACCACCTACGTCTCGCTCGCCGGCCGCTACGTCGTGCTGATGCCGACCAACCCGCGCGGCGGAGGCGTCT CGCGCCGCATCGAAGGCGAAGAGCGCAACGAACTGCGCGACACGCTGGCGCAGCTCGACATCCCCGAAGGCATGAGCCTG ATCGCGCGCACCGCCGGCATCGGTCGGACTGCCGAAGAATTCCAGTGGGACCTGAACTATCTCCTGAGCCTGTGGAAGGC GATCGACGGCGCCTCGACGTCGATGTCGGGCGCCTTCCTGATCTACCAGGAAGGCAGCCTCGTGATCCGCGCGATCCGCG ACTACTTCTCGGCCGACATCGGCGAAATCCTGATCGACACCGAAGACATCTACGAGCAGGCGCAGCAGTTCATGGCGCAC GTGATGCCGGCCAACGTCAACAAGGTCAAGCTCTACCGCGACGACGTGCCGCTGTTCTCGCGCTTCCAGATCGAGCACCA GATCGAGTCGGCGTTCTCGCGCCAGGTCAACCTGCCGTCGGGCGGCGCGATCGTCATCGACCATACCGAGGCGTTGGTGT CGATCGACGTCAACTCGGCGCGCGCGACCAAGGGCAGCGACGTCGAGCAGACCGCTTACAACACCAACCTCGAAGCGGCC GACGAAGTGGCCCGCCAGATGCGTCTGCGCGATCTCGGTGGCCTGATCGTGATCGATTTCATCGACATGGAGAACCCCAA GCATCAACGCGAGGTCGAGAACCGCCTGCGCGATGCGCTCCATCACGACCGCGCGCGCGTGCAGACCGGCAAGATCTCGC GCTTCGGCCTGCTCGAAATGTCGCGCCAGCGGCTGCAGCCCTCGCTCGGCGAGACCAGCTACAACCCCTGCCCGCGCTGC CACGGCACCGGCCACATCCGCGGCACCGAGTCGTCGGCTTTGCACATCCTGCGCATCCTGCAGGAAGAGGCGATGAAGGA GAACACCGGCGCCGTGCACGTCCAGCTGCCGGTCGACGTCGCGACTTTCCTGCTGAACGAAAAACGGCCCGACATCCACA CGGTCGAGTCGCGCCTCAAGGTCAACGTGGTGTTGATCCCCAACATCCACATGGAGACCCCGCACTACACAATCACGCGT CTGCGCCACGACGAACTGAACGTCGCCGGCGCGGCCGAGCCGAGCTACAAGATGGCGCTGGTGCCGGAAACCGAAGCGAT CTACCAGACCGCCCAGGCCGCCGCACCTTTACGCCAGGAAGCCGCGGTCAAGTCGATTCCGCCGCCGCAACCGACCGTCG CGCCGCGCCCCGTCGTGCCGGCGAGCGAGCCCGCGCCCGCGGGCCTCTTCGACCGCATCTTCGGCTGGTTCAAGAAACGC GGCGACGAGACGCACGCGCCAGAAGCGGCGCCCGCGGCAGAAGCGGTGCCCGCGATCGTGCGCAGTGAACGTCCGAGCGA GCGCCGCGAGCGTGAACGCAAGCCGGGGCAGCGCCGCGGTCGCGGTGAAGGCCGCGAAGGGCGCGAGGGTCGGAACGGCG AGGGCCGCAATGGCGAAGCACGCCAAGGCGAGTCGCGCCAAACCGAGCCGCGCCAGCCCGAAGTGCGCGAGCCGCGCGCC GAGCAGGCGAAACCGCCGCGCCCGCCGCGTCAACCCAAGCCTCGCCCCGAGGCGGAAGTTGCCCCCCGCGCCGCGACTGC GCCCGTTGCCGAGGAACCCGCCGGCGAGGAAAAGCGCGAGCCGCGCAGCCGTCGTGGCCGCGGTCGTCGCGGTCGTGGCG AAGGCCGCAGCGAAGCAGCGGCGAACGGCAGCGCGACCCCGCGCGCCGTGATCGAAATCGCCGGCTATCGGGCGGTCATC GAACTTGCGCGGCCCGCCCGCCCGGCGCCGGCCGCGGCAGCCCCGGTTGCAGCCGCGGCCGAGCCTGCCGCGGCGCCGGC TCCGTCGCAGCAGGCCCTGCAACTCGATGCGCCTACCCCGGCCACCAAACCGGCCCCGGGTGCGGTGACTGCATCGCCCG CGGAAATTCTCGCCGCGCTCGCAGCCGGCGAAGCCGAACTGCAACAGGTCGAGACCCGCTCGGCGGCCGCCGCTGCGGCG GATGGAAGCGAGCCGAGCCGGCCCCGTCGGCGTCGCCGTCCGTCGGTCAAGGCCGACGCCGAGCCGGTGAGCCTGATGCA GGTCGAGACCAGCGCGCCGATCGAAGTCCCGGTGGACGCTCCTGCGCCGGCCGCGGGGCCTCACCCGACGCGTCGCCGCC CGCGCCCGCAGCCGAGCGCACCGCAGGAACCGCTGGTGCAGGTCGAAACGCAGGCGAAGTAA
Upstream 100 bases:
>100_bases CTCCATGCCATTTCACTCGACCCCATCGTGATCGCATGAGCCGCCGACCCAAGGCGGCAGTCTGGCCTGTCCCGTATGCA CGCGCGCGGGAGTCATATAA
Downstream 100 bases:
>100_bases GTCCGCGCCGCCATGAAAAAGGGCCGCTTCGAGCGGCCCTTTTTTCGTCCAAGCGCTCAGCTTCCCGATCGCATCCTGAC CTGGTTTCCGCCCGTGATTT
Product: RNAse E
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 873; Mature: 873
Protein sequence:
>873_residues MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCERHGFLPFKEIARSCLPN GGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSL IARTAGIGRTAEEFQWDLNYLLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSARATKGSDVEQTAYNTNLEAA DEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDALHHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRC HGTGHIRGTESSALHILRILQEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVPASEPAPAGLFDRIFGWFKKR GDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRGRGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRA EQAKPPRPPRQPKPRPEAEVAPRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAALAAGEAELQQVETRSAAAAAA DGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDAPAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK
Sequences:
>Translated_873_residues MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCERHGFLPFKEIARSCLPN GGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSL IARTAGIGRTAEEFQWDLNYLLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSARATKGSDVEQTAYNTNLEAA DEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDALHHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRC HGTGHIRGTESSALHILRILQEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVPASEPAPAGLFDRIFGWFKKR GDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRGRGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRA EQAKPPRPPRQPKPRPEAEVAPRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAALAAGEAELQQVETRSAAAAAA DGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDAPAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK >Mature_873_residues MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCERHGFLPFKEIARSCLPN GGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSL IARTAGIGRTAEEFQWDLNYLLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSARATKGSDVEQTAYNTNLEAA DEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDALHHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRC HGTGHIRGTESSALHILRILQEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVPASEPAPAGLFDRIFGWFKKR GDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRGRGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRA EQAKPPRPPRQPKPRPEAEVAPRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAALAAGEAELQQVETRSAAAAAA DGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDAPAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK
Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. Major endoribonuclease participating in mRNA turnover. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic proce
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787325, Length=493, Percent_Identity=62.6774847870183, Blast_Score=649, Evalue=0.0, Organism=Escherichia coli, GI87082235, Length=425, Percent_Identity=37.4117647058824, Blast_Score=253, Evalue=5e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR021968 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 95361; Mature: 95361
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDY CCCCCCCCCCCCCEEEEEECCCEEEEEECHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHC GCERHGFLPFKEIARSCLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRY CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCE VVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNY EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH LLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHEEECCHHHHHHHHHHHHH VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSA HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCC RATKGSDVEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDAL CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHH HHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRIL HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH QEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR HHHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHHCCCEEEEEEEECCCEECCCCEEEEE LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVP EECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ASEPAPAGLFDRIFGWFKKRGDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRG CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHCC RGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRAEQAKPPRPPRQPKPRPEAEV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC APRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI CCCCCCCCCCCCCCCCHHCCCHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAAL HHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH AAGEAELQQVETRSAAAAAADGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDA HCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCEEECCCC PAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC >Mature Secondary Structure MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDY CCCCCCCCCCCCCEEEEEECCCEEEEEECHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHC GCERHGFLPFKEIARSCLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRY CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCE VVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNY EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH LLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHEEECCHHHHHHHHHHHHH VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSA HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCC RATKGSDVEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDAL CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHH HHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRIL HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH QEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR HHHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHHCCCEEEEEEEECCCEECCCCEEEEE LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVP EECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ASEPAPAGLFDRIFGWFKKRGDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRG CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHCC RGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRAEQAKPPRPPRQPKPRPEAEV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC APRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI CCCCCCCCCCCCCCCCHHCCCHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAAL HHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH AAGEAELQQVETRSAAAAAADGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDA HCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCEEECCCC PAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]