| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ymfK [C]
Identifier: 74317534
GI number: 74317534
Start: 1603840
End: 1604202
Strand: Reverse
Name: ymfK [C]
Synonym: Tbd_1516
Alternate gene names: 74317534
Gene position: 1604202-1603840 (Counterclockwise)
Preceding gene: 74317535
Following gene: 74317533
Centisome position: 55.13
GC content: 59.23
Gene sequence:
>363_bases ATGAGCGAGCCGAGCGAGCGCAAAACCATCCCGATTCAGGACATCAACGAGGCGAGCAAGTGCGCAGGCTCCGAGCCCTA CGCGCTGATGGTGCTTGGGGATTCGATGATGCCGGAGTTCGAGGAAGGGGAAATCATCGTCGTCGAGCCATCCGGGCTCG TCAAGGACGGCTCCTATGTCGTGGCCTACGTCAACGACGAATACATCTTCCGCCAGATCGTGAAGCGCGACGACGGCTGG ATGCTGAAACCCGTCAATCCGCTCTACGAGAACATTCCGGTCGACGATCTCGACGTCGCCAAGGGCGTCGTCATCATGAA GAAGAAGCCCGGCCGCCGTAGCGAGCAGAAGCGCTACATTTGA
Upstream 100 bases:
>100_bases CTCGACGAACTCGACGCGATGTTCATGCGCGGACGCTGAGCGGCCGAGCGTTTTGCTATAATCCCGACCATATTAGTCGG GTATTAAACAAGGATTCCTC
Downstream 100 bases:
>100_bases TCCGCTTATCAATGTATTAGATGCGCTTATCCATCTCGCCCGAAGCATTAGAATTTAATTGTTGACTAATATACTCAAGT ATCTAGACTGACACCGTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MSEPSERKTIPIQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVVAYVNDEYIFRQIVKRDDGW MLKPVNPLYENIPVDDLDVAKGVVIMKKKPGRRSEQKRYI
Sequences:
>Translated_120_residues MSEPSERKTIPIQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVVAYVNDEYIFRQIVKRDDGW MLKPVNPLYENIPVDDLDVAKGVVIMKKKPGRRSEQKRYI >Mature_119_residues SEPSERKTIPIQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYVVAYVNDEYIFRQIVKRDDGWM LKPVNPLYENIPVDDLDVAKGVVIMKKKPGRRSEQKRYI
Specific function: Unknown
COG id: COG1974
COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13596; Mature: 13465
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPSERKTIPIQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYV CCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCEE VAYVNDEYIFRQIVKRDDGWMLKPVNPLYENIPVDDLDVAKGVVIMKKKPGRRSEQKRYI EEEECCHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure SEPSERKTIPIQDINEASKCAGSEPYALMVLGDSMMPEFEEGEIIVVEPSGLVKDGSYV CCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCEE VAYVNDEYIFRQIVKRDDGWMLKPVNPLYENIPVDDLDVAKGVVIMKKKPGRRSEQKRYI EEEECCHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA