| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is mutL
Identifier: 74317535
GI number: 74317535
Start: 1604264
End: 1606060
Strand: Reverse
Name: mutL
Synonym: Tbd_1517
Alternate gene names: 74317535
Gene position: 1606060-1604264 (Counterclockwise)
Preceding gene: 74317536
Following gene: 74317534
Centisome position: 55.19
GC content: 69.62
Gene sequence:
>1797_bases GTGAGCATTCAGGTTCTGTCGGATGTGCTGATTTCCCAGATCGCGGCGGGCGAGGTCGTCGAGCGTCCGGCCGCGGCGCT CAAGGAAATCCTCGAGAACAGCCTCGACGCCGGTGCGACCGCGATCGACGTCGAACTCGAGCAGGGCGGCGTCAAGCGCA TCCGGGTCAGCGACGACGGCGTCGGCATCCCGCGCGACGAACTGGCATTGGCCCTGACGCGGCACGCGACGAGCAAGATC GCGACGCTGGCGGACCTCGAGCAGGTCGCCAGCCTCGGCTTTCGCGGCGAGGCGCTGGCGTCGATCGCGTCGGTCGCGCG CGTTCGCCTGACCAGCCGTCACGCCGGGAGCGACCACGCCTGGACGATCCACGTCGACGGCGGACCGTTGCAGCCTTCGT CACCCGCAGCGCGCAGCGGCGGGACGACGATCGACATCGAGGATATGTTCTTCAACACGCCGGCGCGGCGCAAATTCCTC AAGACAGAAGCGACCGAGTATGCCCACTGCGCCGAAACCGTGAGGCGCCTCGCACTGGCCTGGCCGCAGGTCGCGTTCAC GCTCGTGCACAACGGGCGCGCGCAACTGCGTCTGAAGGCCGAAGCCGCCGCCGCCCGCGTGCGTCACGTGCTCGGCGAGG TGTTCGAGCAGCACGCCATCGCCGTCGACGCCGCTGCCGGCGCGCTGCGCCTGAGCGGGTGGGTCGTCCGCCCGGTCGCG GCGACGGCGAGCCGCGACGCCCAGCACGTCTTCGTCAACGGACGTTACGTCCGCGACAAGCTGATCGTGCACGCGCTGCG CGAAGCCTATCGCGACGTGCTCCACCATCAGCTCAACCCGGCATATTGCCTGTTCGTCGAGTTGCCGCCAGAGCACGTCG ACGTCAATGTGCACCCCGCCAAAACCGAGATCCGTTTCCGCGACAGCCGCGGCGTGCACCAGTTTCTCTATCATGCCGTC GAGCGCCTGCTCGCGGCGCCGGTAGCCCCAGCGGCACCGCCATCCGGGCCTGACGCGCGGCCCCCTACCTTCCTGCAGCC GCGGCAGGCTGCGATGTCGCTGCAGGTCGAGGAGGCGATGGCGTTTTATGCGCCCTTCGCCGCGATGGCGCCGGGCGAGG GGGACGAAGCCCGGCACGTACCTCAGGCATCTGCGGCAGGGCTGGCAGGCCGCGCCGGCCCCCCGCGCGCTTTCGCGAGC GACTCCTCCGCGGTGCCGCCGCTCGGCTACGCGCTCGGCCAATTGCATGGCGTCTACGTGCTCGCCCAGAACGCGCACGG CCTCGTGCTCGTCGACATGCACGCGGCGCACGAACGCGTCGTTTACGAAAAACTCAAGACCGCGCTCGACCGCCGCGCGG TGCCGGCGCAGGCCCTGCTGATCCCGGTCGCGCTCACGGCTGACCCGCGCGAGGTCGCGGAAATCGCCCCGCATCTCGAC CAACTCCGCGAGATCGGCTTCGAGCTGTCGATCACTTCGCCCAATTCGGTCGCGGTGCGCGCGGTGCCGTCGCTGCTCAA GAACGCCGATCCCGTCGAGCTGACGCGAGCGATTCTCGCCGAAATCGCCGAGTTCGGCGTCGCCCGGCTCCTCGCCGAGC GCCGCAACGAGCTGTTGGCGACGCTGGCGTGCCACGGCGCCGTGCGCGCCCACCGCACGCTCAGCGTGCCGGAAATGAAC GCGCTGCTGCGTGAAATGGAAGCGACCGAGCGTGCCGGGCAGTGCAATCACGGGCGGCCGACCTGGTTCCAGCTCAGGCT CGACGAACTCGACGCGATGTTCATGCGCGGACGCTGA
Upstream 100 bases:
>100_bases GTGTGCTGCCGCTCGCTCGTGCCCATCTCGGGGCCGATGCGCTCGAGCGGCTCGGGCGTGCGATGGCCGCGCGCCGCGGC ATCCCCTTCGAAGCCAGGTC
Downstream 100 bases:
>100_bases GCGGCCGAGCGTTTTGCTATAATCCCGACCATATTAGTCGGGTATTAAACAAGGATTCCTCATGAGCGAGCCGAGCGAGC GCAAAACCATCCCGATTCAG
Product: DNA mismatch repair protein MutL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 598; Mature: 597
Protein sequence:
>598_residues MSIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDGVGIPRDELALALTRHATSKI ATLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHAWTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFL KTEATEYAHCAETVRRLALAWPQVAFTLVHNGRAQLRLKAEAAAARVRHVLGEVFEQHAIAVDAAAGALRLSGWVVRPVA ATASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVNVHPAKTEIRFRDSRGVHQFLYHAV ERLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQVEEAMAFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFAS DSSAVPPLGYALGQLHGVYVLAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADPREVAEIAPHLD QLREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVARLLAERRNELLATLACHGAVRAHRTLSVPEMN ALLREMEATERAGQCNHGRPTWFQLRLDELDAMFMRGR
Sequences:
>Translated_598_residues MSIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDGVGIPRDELALALTRHATSKI ATLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHAWTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFL KTEATEYAHCAETVRRLALAWPQVAFTLVHNGRAQLRLKAEAAAARVRHVLGEVFEQHAIAVDAAAGALRLSGWVVRPVA ATASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVNVHPAKTEIRFRDSRGVHQFLYHAV ERLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQVEEAMAFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFAS DSSAVPPLGYALGQLHGVYVLAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADPREVAEIAPHLD QLREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVARLLAERRNELLATLACHGAVRAHRTLSVPEMN ALLREMEATERAGQCNHGRPTWFQLRLDELDAMFMRGR >Mature_597_residues SIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDGVGIPRDELALALTRHATSKIA TLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHAWTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFLK TEATEYAHCAETVRRLALAWPQVAFTLVHNGRAQLRLKAEAAAARVRHVLGEVFEQHAIAVDAAAGALRLSGWVVRPVAA TASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVNVHPAKTEIRFRDSRGVHQFLYHAVE RLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQVEEAMAFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFASD SSAVPPLGYALGQLHGVYVLAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADPREVAEIAPHLDQ LREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVARLLAERRNELLATLACHGAVRAHRTLSVPEMNA LLREMEATERAGQCNHGRPTWFQLRLDELDAMFMRGR
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family
Homologues:
Organism=Homo sapiens, GI4557757, Length=310, Percent_Identity=34.1935483870968, Blast_Score=190, Evalue=4e-48, Organism=Homo sapiens, GI4505913, Length=328, Percent_Identity=28.3536585365854, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI310128478, Length=328, Percent_Identity=28.3536585365854, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI4505911, Length=342, Percent_Identity=28.0701754385965, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI189458898, Length=342, Percent_Identity=28.0701754385965, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI189458896, Length=333, Percent_Identity=26.4264264264264, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI310128480, Length=293, Percent_Identity=25.2559726962457, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI263191589, Length=216, Percent_Identity=30.0925925925926, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI91992162, Length=351, Percent_Identity=26.2108262108262, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI91992160, Length=351, Percent_Identity=26.2108262108262, Blast_Score=95, Evalue=2e-19, Organism=Escherichia coli, GI1790612, Length=540, Percent_Identity=40.5555555555556, Blast_Score=331, Evalue=9e-92, Organism=Caenorhabditis elegans, GI71991825, Length=321, Percent_Identity=34.8909657320872, Blast_Score=189, Evalue=3e-48, Organism=Caenorhabditis elegans, GI17562796, Length=344, Percent_Identity=25.2906976744186, Blast_Score=133, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6323819, Length=324, Percent_Identity=33.641975308642, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6324247, Length=345, Percent_Identity=27.8260869565217, Blast_Score=128, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6325093, Length=264, Percent_Identity=25, Blast_Score=100, Evalue=9e-22, Organism=Saccharomyces cerevisiae, GI6323063, Length=365, Percent_Identity=23.5616438356164, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136968, Length=330, Percent_Identity=35.4545454545455, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI17136970, Length=356, Percent_Identity=27.247191011236, Blast_Score=120, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MUTL_THIDA (Q3SIQ5)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315275.1 - ProteinModelPortal: Q3SIQ5 - STRING: Q3SIQ5 - GeneID: 3671996 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_1517 - NMPDR: fig|292415.3.peg.1517 - eggNOG: COG0323 - HOGENOM: HBG520262 - OMA: ITHPEIN - PhylomeDB: Q3SIQ5 - BioCyc: TDEN292415:TBD_1517-MONOMER - HAMAP: MF_00149 - InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 - Gene3D: G3DSA:3.30.565.10 - Gene3D: G3DSA:3.30.230.10 - PANTHER: PTHR10073 - SMART: SM00387 - SMART: SM00853 - TIGRFAMs: TIGR00585
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C; SSF55874 ATP_bd_ATPase; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: NA
Molecular weight: Translated: 64621; Mature: 64489
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCC VGIPRDELALALTRHATSKIATLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCE WTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFLKTEATEYAHCAETVRRLALA EEEEECCCCCCCCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WPQVAFTLVHNGRAQLRLKAEAAAARVRHVLGEVFEQHAIAVDAAAGALRLSGWVVRPVA HHHHHEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCCHHEECCEEEECHH ATASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVNVHPA HHCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECC KTEIRFRDSRGVHQFLYHAVERLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQVEEAM CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFASDSSAVPPLGYALGQLHGVYV HHHHCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEE LAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADPREVAEIAPHLD EEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHH QLREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVARLLAERRNELLA HHHHCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLACHGAVRAHRTLSVPEMNALLREMEATERAGQCNHGRPTWFQLRLDELDAMFMRGR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHCCC >Mature Secondary Structure SIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCC VGIPRDELALALTRHATSKIATLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCE WTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFLKTEATEYAHCAETVRRLALA EEEEECCCCCCCCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WPQVAFTLVHNGRAQLRLKAEAAAARVRHVLGEVFEQHAIAVDAAAGALRLSGWVVRPVA HHHHHEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEECCCCHHEECCEEEECHH ATASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVNVHPA HHCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECC KTEIRFRDSRGVHQFLYHAVERLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQVEEAM CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFASDSSAVPPLGYALGQLHGVYV HHHHCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEE LAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADPREVAEIAPHLD EEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHH QLREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVARLLAERRNELLA HHHHCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLACHGAVRAHRTLSVPEMNALLREMEATERAGQCNHGRPTWFQLRLDELDAMFMRGR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA