| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317510
Identifier: 74317510
GI number: 74317510
Start: 1581096
End: 1583813
Strand: Reverse
Name: 74317510
Synonym: Tbd_1492
Alternate gene names: NA
Gene position: 1583813-1581096 (Counterclockwise)
Preceding gene: 74317511
Following gene: 74317509
Centisome position: 54.43
GC content: 58.87
Gene sequence:
>2718_bases ATGGCCCTCCATCCTGAATTGCCTGAGTCGCCCTATGACGAGTTGCTGCCCGACCAGCGGTGGTTTCCTGCCGCCGAAGA GTTGCGCAGCACAGCTTACGAAAAGCTATTGCCTCCCTTGGTTGCCAAGATTCGTGAAGAAATCAAGGCGTGGAGAGACG CAAACTATGCTGGCGCATCTGGCACTTCCCGCGCGTTACTGAACTGGTGGTTTGGAACCGGGCACTTGCTCGAACAGGCA GACGGTAGCCTATCGCCGTACCGCTATTACTTCGCACAGCGCGAAGCCGTGGAAACCGTGATCTGGCTGCACGACGTGCG GAAGGTGCGGGACAAGTTCGATTTGTTGCGCTTCGATGCGTCGGGTGCTGCATCCTCCGGAATGTTCCCGGAGGACTGGC CCCGGTATGTCGTCAAAATGGCCACCGGCGCAGGCAAGACCAAGGTGCTCTCCCTGCTCATGGCCTGGAGCTACTTCCAC AAGCTCTACGAAGCAGATTCGCCGCTTTCACGAAATTTTCTGCTGATCGCACCCAACATCATTGTGCTGGATCGTTTGCG TGCGGATTTCGATGGGCTGCGCATCTTCTTCAACGATCCCATTCTTCCGGACAATGGTTTCGAGGGCCAAAACTGGCGCG ACGATTTCCAGATGACGCTGCATATTCAGGATGACGTACGCGTCCAACGCGATACGGGCAATCTGTTCCTGACCAACATT CATCGGGTCTATCTCAGCGACATTCGCGAACCAACGCTGGAAGACGATGACCTGCGCGATTATTTCCTGTCGCCCTTTGG CTCCAAGCCCTCCGGAAAGACCACGGATAGCAGGGCTGACCTGGGTGAAATCGTTCGCGAACTGGATGAATTGGCCGTGT TCAACGATGAGGCGCATCACATCCACGATGATCGCCTTGCCTGGTTCAAAAGCATCCAGGACATTCATCACAGGATGCTG CAGAAGGACGGCCGTCTGGCGCTGCAAGTGGACGTAACGGCCACGCCCAAGCACAATAACGGTGCGATTTTCGTGCAGAC CGTTTCGGACTATCCGCTGGTCGAGGCCATCCACCAGAATGTGGTGAAGCACCCGGTGCTGCCCGATCCGGCAAGCCGTG CCCGCCTGCAGGAGCACAAAAGCGCGATCTTCACCGAGCACTACGCCGATTACCTGAACCTCGGCATCGAGGAATGGCGC AAGAGCTATGCCGAACACGAGGCGCTGGGCAAGAAGGCGGTGATGTTCGTCATGGTGGACGACACCAAGAACTGCGACGA AGTCGGCGCCTGGCTGGAAAAAACCTGCCCCGAACTGCAAGGCGCTGTGCTCGTCATCCACACCAAGAACAACGGCGAGA TTTCCGAATCCGCCACGGGCAAGAACAAGGAAGAACTGGAGCGCCTACGCAAGCAGTCCAACGAAATCGACTCCTGGGCC AGCCCCTATAAAGCCATTGTTTCCGTGCTGATGCTCAAGGAAGGCTGGGACGTGCGCAACGTCACCACCATCGTCGGCCT GCGCGCCTACGCGGCGCAAAGCAACATCCTGCCCGAGCAAACTCTGGGCCGCGGCTTGCGCCGCATGTATTTCGGCTCCG ACACGCCCGAAACCGTTTCGGTCATGGGCACGCCCACCTTCATGGAATTCGTCGAATCCATCCAGAGCGAAGGCGTCCAG CTCGAATATCGCCCCATGGGCGGCGGAACCAAGCGGCAGGATTCGCTGGTCGTCGAGGTGGAGGCGCAAAACGCCGACAA GGATCTGGACGCGCTGGATATCGAACTCCCTCGGCTGACCCGTCGCTTCAACCGCGAATACCAGGATATCGACGCGCTCG ATCCGGCCAGGCTGGGCAACGCCAAGCTGAAGCTCAAGGATTTCACCCCCGAGGAAACCCGCGAGATCGTCTTCAAAACC ATGCTGGATGCCGAAATCCACCACACCATCCTGCTCGACGGTGCCGGGCCGGCCGATTACCGATCAGTGGTCGGTTTCTT TGCCCGCCAACTACTCAAGGAACTGCGCCTCGTCGGCGGTTACGACGTGCTCTATCCCAAGGTCAAGACCTTCATGGCCG AGCACCTGTTCGCCGACTCTCCGGTAAGCCTCGATGATCCGGTGGTGCTGCGCAATCTCTCCGAGCCCGATGCCGGGAAA GTGTTGTTCGACGCATTCAAAAAAGCCATCAACACGCTTACGGTCCAGGACACCGGCACCTGCCGTATTGAAGATCGCAT CCGCCTGCGCGACACGCGCCCCTTCCGTACCGAAAACCGCCCCTATTTCGCCCCGAAGAAATCGGTATTCAGCAAGATCG TCGGCGAGCCGCATGCGGGCGGATTCGAAATGGCCTTCGCCAGCTTTCTCGACGACGCACCGGATGTTGTCGCCTTCGCC AAGAACTACCTCGCCGTCGGGTTCAAGATCGATTACGTCAAGGCCGACGGCGATTTATCGAATTACGTGCCGGACTTCCT GCTGAAAACCGCCGACGGCACGGTCTGGATCATCGAAACCAAGGGGCGCGCCGAACTTGACCTGCCGCAAAAGATGGCCC GCCTGCGCCAGTGGTGTGCGGATGCAACCCAGGCCAGCCAGGCCGAGGGGGGGGCGGCCTACCGCTTCGTATACGTGGAC CAACAAGGCTATGAGCGCAACCCGCCTAAGACCTTCGCCGCGCTCGCCGCGAGCTTTACCGAATTTCAGGAGATCTGA
Upstream 100 bases:
>100_bases ACCAGCCGGTAGAGCCACACACGCTGCGGCCGAGAGGTGCGCCGATGTGCGAAGATTCGCCTGATAACAAGCACAAGGAA CATTCTCGTTCTATTGATAT
Downstream 100 bases:
>100_bases ACATGGCCCGCCAGCCCAAGGAAGCCTACGACCTGACGGACGCCGAAAAGCGCGATCTCATACAGTTGATTCAGGAAGGC AAAGCCTTGCCCGAGAAATA
Product: type III restriction-modification enzyme helicase subunit
Products: NA
Alternate protein names: Type III Restriction Res Subunit; Type III Restriction- Helicase Subunit; Type III Restriction; DNA Restriction- System Restriction; Type III Restriction- System Res Subunit; PstII Restriction- Res Subunit; Type III Restriction Res Subunit Family; Type III Restriction- System; Type III Restriction-; Type III Restriction- System Restriction Subunit; Type III Restriction- R/Helicase Subunit; Type III Restriction- System R Subunit
Number of amino acids: Translated: 905; Mature: 904
Protein sequence:
>905_residues MALHPELPESPYDELLPDQRWFPAAEELRSTAYEKLLPPLVAKIREEIKAWRDANYAGASGTSRALLNWWFGTGHLLEQA DGSLSPYRYYFAQREAVETVIWLHDVRKVRDKFDLLRFDASGAASSGMFPEDWPRYVVKMATGAGKTKVLSLLMAWSYFH KLYEADSPLSRNFLLIAPNIIVLDRLRADFDGLRIFFNDPILPDNGFEGQNWRDDFQMTLHIQDDVRVQRDTGNLFLTNI HRVYLSDIREPTLEDDDLRDYFLSPFGSKPSGKTTDSRADLGEIVRELDELAVFNDEAHHIHDDRLAWFKSIQDIHHRML QKDGRLALQVDVTATPKHNNGAIFVQTVSDYPLVEAIHQNVVKHPVLPDPASRARLQEHKSAIFTEHYADYLNLGIEEWR KSYAEHEALGKKAVMFVMVDDTKNCDEVGAWLEKTCPELQGAVLVIHTKNNGEISESATGKNKEELERLRKQSNEIDSWA SPYKAIVSVLMLKEGWDVRNVTTIVGLRAYAAQSNILPEQTLGRGLRRMYFGSDTPETVSVMGTPTFMEFVESIQSEGVQ LEYRPMGGGTKRQDSLVVEVEAQNADKDLDALDIELPRLTRRFNREYQDIDALDPARLGNAKLKLKDFTPEETREIVFKT MLDAEIHHTILLDGAGPADYRSVVGFFARQLLKELRLVGGYDVLYPKVKTFMAEHLFADSPVSLDDPVVLRNLSEPDAGK VLFDAFKKAINTLTVQDTGTCRIEDRIRLRDTRPFRTENRPYFAPKKSVFSKIVGEPHAGGFEMAFASFLDDAPDVVAFA KNYLAVGFKIDYVKADGDLSNYVPDFLLKTADGTVWIIETKGRAELDLPQKMARLRQWCADATQASQAEGGAAYRFVYVD QQGYERNPPKTFAALAASFTEFQEI
Sequences:
>Translated_905_residues MALHPELPESPYDELLPDQRWFPAAEELRSTAYEKLLPPLVAKIREEIKAWRDANYAGASGTSRALLNWWFGTGHLLEQA DGSLSPYRYYFAQREAVETVIWLHDVRKVRDKFDLLRFDASGAASSGMFPEDWPRYVVKMATGAGKTKVLSLLMAWSYFH KLYEADSPLSRNFLLIAPNIIVLDRLRADFDGLRIFFNDPILPDNGFEGQNWRDDFQMTLHIQDDVRVQRDTGNLFLTNI HRVYLSDIREPTLEDDDLRDYFLSPFGSKPSGKTTDSRADLGEIVRELDELAVFNDEAHHIHDDRLAWFKSIQDIHHRML QKDGRLALQVDVTATPKHNNGAIFVQTVSDYPLVEAIHQNVVKHPVLPDPASRARLQEHKSAIFTEHYADYLNLGIEEWR KSYAEHEALGKKAVMFVMVDDTKNCDEVGAWLEKTCPELQGAVLVIHTKNNGEISESATGKNKEELERLRKQSNEIDSWA SPYKAIVSVLMLKEGWDVRNVTTIVGLRAYAAQSNILPEQTLGRGLRRMYFGSDTPETVSVMGTPTFMEFVESIQSEGVQ LEYRPMGGGTKRQDSLVVEVEAQNADKDLDALDIELPRLTRRFNREYQDIDALDPARLGNAKLKLKDFTPEETREIVFKT MLDAEIHHTILLDGAGPADYRSVVGFFARQLLKELRLVGGYDVLYPKVKTFMAEHLFADSPVSLDDPVVLRNLSEPDAGK VLFDAFKKAINTLTVQDTGTCRIEDRIRLRDTRPFRTENRPYFAPKKSVFSKIVGEPHAGGFEMAFASFLDDAPDVVAFA KNYLAVGFKIDYVKADGDLSNYVPDFLLKTADGTVWIIETKGRAELDLPQKMARLRQWCADATQASQAEGGAAYRFVYVD QQGYERNPPKTFAALAASFTEFQEI >Mature_904_residues ALHPELPESPYDELLPDQRWFPAAEELRSTAYEKLLPPLVAKIREEIKAWRDANYAGASGTSRALLNWWFGTGHLLEQAD GSLSPYRYYFAQREAVETVIWLHDVRKVRDKFDLLRFDASGAASSGMFPEDWPRYVVKMATGAGKTKVLSLLMAWSYFHK LYEADSPLSRNFLLIAPNIIVLDRLRADFDGLRIFFNDPILPDNGFEGQNWRDDFQMTLHIQDDVRVQRDTGNLFLTNIH RVYLSDIREPTLEDDDLRDYFLSPFGSKPSGKTTDSRADLGEIVRELDELAVFNDEAHHIHDDRLAWFKSIQDIHHRMLQ KDGRLALQVDVTATPKHNNGAIFVQTVSDYPLVEAIHQNVVKHPVLPDPASRARLQEHKSAIFTEHYADYLNLGIEEWRK SYAEHEALGKKAVMFVMVDDTKNCDEVGAWLEKTCPELQGAVLVIHTKNNGEISESATGKNKEELERLRKQSNEIDSWAS PYKAIVSVLMLKEGWDVRNVTTIVGLRAYAAQSNILPEQTLGRGLRRMYFGSDTPETVSVMGTPTFMEFVESIQSEGVQL EYRPMGGGTKRQDSLVVEVEAQNADKDLDALDIELPRLTRRFNREYQDIDALDPARLGNAKLKLKDFTPEETREIVFKTM LDAEIHHTILLDGAGPADYRSVVGFFARQLLKELRLVGGYDVLYPKVKTFMAEHLFADSPVSLDDPVVLRNLSEPDAGKV LFDAFKKAINTLTVQDTGTCRIEDRIRLRDTRPFRTENRPYFAPKKSVFSKIVGEPHAGGFEMAFASFLDDAPDVVAFAK NYLAVGFKIDYVKADGDLSNYVPDFLLKTADGTVWIIETKGRAELDLPQKMARLRQWCADATQASQAEGGAAYRFVYVDQ QGYERNPPKTFAALAASFTEFQEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102685; Mature: 102554
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALHPELPESPYDELLPDQRWFPAAEELRSTAYEKLLPPLVAKIREEIKAWRDANYAGAS CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GTSRALLNWWFGTGHLLEQADGSLSPYRYYFAQREAVETVIWLHDVRKVRDKFDLLRFDA CCCHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC SGAASSGMFPEDWPRYVVKMATGAGKTKVLSLLMAWSYFHKLYEADSPLSRNFLLIAPNI CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCE IVLDRLRADFDGLRIFFNDPILPDNGFEGQNWRDDFQMTLHIQDDVRVQRDTGNLFLTNI EEEHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCEEEHHH HRVYLSDIREPTLEDDDLRDYFLSPFGSKPSGKTTDSRADLGEIVRELDELAVFNDEAHH HHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH IHDDRLAWFKSIQDIHHRMLQKDGRLALQVDVTATPKHNNGAIFVQTVSDYPLVEAIHQN CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHH VVKHPVLPDPASRARLQEHKSAIFTEHYADYLNLGIEEWRKSYAEHEALGKKAVMFVMVD HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEC DTKNCDEVGAWLEKTCPELQGAVLVIHTKNNGEISESATGKNKEELERLRKQSNEIDSWA CCCCHHHHHHHHHHHCHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH SPYKAIVSVLMLKEGWDVRNVTTIVGLRAYAAQSNILPEQTLGRGLRRMYFGSDTPETVS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEE VMGTPTFMEFVESIQSEGVQLEYRPMGGGTKRQDSLVVEVEAQNADKDLDALDIELPRLT EECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHCCCHHHHH RRFNREYQDIDALDPARLGNAKLKLKDFTPEETREIVFKTMLDAEIHHTILLDGAGPADY HHHCCHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCHHH RSVVGFFARQLLKELRLVGGYDVLYPKVKTFMAEHLFADSPVSLDDPVVLRNLSEPDAGK HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCH VLFDAFKKAINTLTVQDTGTCRIEDRIRLRDTRPFRTENRPYFAPKKSVFSKIVGEPHAG HHHHHHHHHHHEEEEECCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC GFEMAFASFLDDAPDVVAFAKNYLAVGFKIDYVKADGDLSNYVPDFLLKTADGTVWIIET CHHHHHHHHHCCCCHHHHHHHHHEEEEEEEEEEECCCCHHHHHHHHHEECCCCEEEEEEC KGRAELDLPQKMARLRQWCADATQASQAEGGAAYRFVYVDQQGYERNPPKTFAALAASFT CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH EFQEI HHHCC >Mature Secondary Structure ALHPELPESPYDELLPDQRWFPAAEELRSTAYEKLLPPLVAKIREEIKAWRDANYAGAS CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GTSRALLNWWFGTGHLLEQADGSLSPYRYYFAQREAVETVIWLHDVRKVRDKFDLLRFDA CCCHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC SGAASSGMFPEDWPRYVVKMATGAGKTKVLSLLMAWSYFHKLYEADSPLSRNFLLIAPNI CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCE IVLDRLRADFDGLRIFFNDPILPDNGFEGQNWRDDFQMTLHIQDDVRVQRDTGNLFLTNI EEEHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCEEEHHH HRVYLSDIREPTLEDDDLRDYFLSPFGSKPSGKTTDSRADLGEIVRELDELAVFNDEAHH HHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH IHDDRLAWFKSIQDIHHRMLQKDGRLALQVDVTATPKHNNGAIFVQTVSDYPLVEAIHQN CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHH VVKHPVLPDPASRARLQEHKSAIFTEHYADYLNLGIEEWRKSYAEHEALGKKAVMFVMVD HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEC DTKNCDEVGAWLEKTCPELQGAVLVIHTKNNGEISESATGKNKEELERLRKQSNEIDSWA CCCCHHHHHHHHHHHCHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH SPYKAIVSVLMLKEGWDVRNVTTIVGLRAYAAQSNILPEQTLGRGLRRMYFGSDTPETVS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEE VMGTPTFMEFVESIQSEGVQLEYRPMGGGTKRQDSLVVEVEAQNADKDLDALDIELPRLT EECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHCCCHHHHH RRFNREYQDIDALDPARLGNAKLKLKDFTPEETREIVFKTMLDAEIHHTILLDGAGPADY HHHCCHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCHHH RSVVGFFARQLLKELRLVGGYDVLYPKVKTFMAEHLFADSPVSLDDPVVLRNLSEPDAGK HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCH VLFDAFKKAINTLTVQDTGTCRIEDRIRLRDTRPFRTENRPYFAPKKSVFSKIVGEPHAG HHHHHHHHHHHEEEEECCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC GFEMAFASFLDDAPDVVAFAKNYLAVGFKIDYVKADGDLSNYVPDFLLKTADGTVWIIET CHHHHHHHHHCCCCHHHHHHHHHEEEEEEEEEEECCCCHHHHHHHHHEECCCCEEEEEEC KGRAELDLPQKMARLRQWCADATQASQAEGGAAYRFVYVDQQGYERNPPKTFAALAASFT CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH EFQEI HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA