| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ecaIM [H]
Identifier: 74317509
GI number: 74317509
Start: 1578754
End: 1581093
Strand: Reverse
Name: ecaIM [H]
Synonym: Tbd_1491
Alternate gene names: 74317509
Gene position: 1581093-1578754 (Counterclockwise)
Preceding gene: 74317510
Following gene: 74317508
Centisome position: 54.34
GC content: 56.54
Gene sequence:
>2340_bases ATGGCCCGCCAGCCCAAGGAAGCCTACGACCTGACGGACGCCGAAAAGCGCGATCTCATACAGTTGATTCAGGAAGGCAA AGCCTTGCCCGAGAAATACCGCTTCATCCTGTTCGAGGACAAGCGCGAAGTGGAACTGGTGTGGAACGGCAAGAGCCGCG AGGTCTGCACCACCGTGCTGCCATTTCAGTCGCTGGAGCATGTGGACGAGCCGCGTCTGGAAAAACCGGAACTCGGTACC ATGGACCTGTTCGACACCCGCGGCCGCCAGCTTAAGGGCTGGACCAACAAGCTCATCTGGGGTGATAACAAACTAATTCT TTCATCGCTTAAGAGCGGCGCGCTACGCCAGCAGATCGAGGATGCAGGTGGCTTGAAGCTGATTTACATCGACCCGCCCT TCGATGTGGGAGCCGATTTCTCTATGGACATCGAGATCGGCGGCGAGACCTTCCACAAGGAGCCCAACCTGCTGGAACAG ATAGCCTACCGCGACACTTGGGGGCGCGGGGCGGATTCCTTTATCTCGATGGTCTATGAGCGCTTGATTTTGATGCGGGA TTTGCTGGCGGACGATGGCTCAATATATGTACACATGGGAAAGACTGTTGCTCACTATGTCAGGCTTGCTTGTGAGGAGG TGTTTGGATCAGCGAACATCGTCAATGAGATTACGTGGAAGCGCTCTCATGCACACGGAGATACTGGCCAGGGGGCGTCC CATTTTGGAAGGACTACCGAGACAATTCTTCTTTTCCGGAAGAGCGAAAAAGGGATATGGAATCCACAACACAAACCCTA CACGGATGACGTGCTCGCTAGGGATTACAAATACACGGAAGAAAAGACTGGCGAGCGGTATCGTCTGATGCCAGTCGATG GCCCTGGCGGGGCGGCAAAAGGTAACCCTTATTACGATTTTCTGGGCGTTAAGGGCTATTGGCGGTATTCATTTGAAACA ATGACCAAGCTTTATGAGCAGGGTGAGATCGTACTTTCTTCAACCGGGAAGAGTCTTAGTCGTAAGAAATTCCTCAAAGA TGCGGAAGGCACGCCGGTAGTCGATTTATGGGACGAAGTGAACCGCATCAGTCCAACTTCGTCGGAGAGACTAGACTACC CCACCCAAAAACCAGAAGCTCTGCTCGAACGTATTATCAAAGCCAGTAGCAACGAAGGTGATTTGGTGGCGGACTTTTTT TGTGGCAGTGGTACGACCGCTGCAGTGGCAGAAAAGCTAGGCCGCAAGTGGATAGCAACCGATCTCGGCAAGTTTGGTGT TCACACCACGCGCAAGCGCATGATTGGGGTGCAGCGGCAACTGAAGGACTCCGGCAAGCCGTTCCGCGCCTTCGAGGTGT TGAACCTGGGTCGGTATGAGCGCCAGGCTTATCTCAATGTTGGTGGGCGCTTGAACGGCCATCAGAAGGAACAGCTACTG GCACAAAAAGAGCGCGAGTTCCGTGATCTCATCCTGCGCGCCTACAAGGCCCAGCCGCTGGAGGGCGAAAGCTTCTTCCA TGGCAAGAACGCGGGGCGGCTGGTCGTGATCGGCCCCATCAACCTGCCCGTGGGCCGGCTGTTCGTGGAGGAAGTCATCA CCGAGTGTCGCAAGCGCGGCGCCTCGCGCGTGGACATGCTCGCCTTCGAGTTCGAGATGGGCCTGTTCCCGGCAGTGCTG GAGGAGGCCAAGCAGAAGGGTATCGACCTGGTGCCAAAGCAGATTCCGCCCGAAGTGTTCGACAAGCGCGCGGTCGAAAA AGGCCAGGTGGTGTTCTTCGATATCAGCTTCGTCGAGGCCACGCCGCGCTACGCCAAGAAAGACAAGTTCACGCTGCAGA TCGAGCTGACGGATTTTTCCGTCTACTACACCCAGGGCGCGGCCGAGGCCGCTGCCGCTAGCCTGAAAAATGGCAAGAGC CAGGTTGTTTGCGAACAAGGCCAGCTTATCAAGTTGAGCAAGGACAAGGACGGCGTCGTCACCCGCGAGATTCTTACCAA GAACTGGACCGACTGGGTGGACTACTGGGCGGTGGACTTCGACTACATGAGCCGCAAGGAAATCATCAAGGTCGCCAAGG GCGCAGGCATTGACGGCAGCCTTCCCGGCTTCGAGCCGCCGCAGGGCGAGTTGACCCTGCCGGAGTTCGAGGAACGCTGG ACCGGCGGCTACATCTTTGAAAACGAGTGGCAGAGCTTCCGCACCCGCAAGAGTCGCGACCTGGAAATGATTTCCGCGCC GCACACCTACACCCAGGCTGGCCGCTATACCGTGGCCGTAAAGGTGATTGATATCTTCGGCAACGACACCATGGTGCTGG TGCCGGTGAGCGTGGGCTAA
Upstream 100 bases:
>100_bases ACCGCTTCGTATACGTGGACCAACAAGGCTATGAGCGCAACCCGCCTAAGACCTTCGCCGCGCTCGCCGCGAGCTTTACC GAATTTCAGGAGATCTGAAC
Downstream 100 bases:
>100_bases GCGCCATGGCGGTGCCAAATCCTGTCCGCCTGTTTCACATCACGGCAATTGCCAATTTGCCGGCAATTTGTGCGGCAGGC GCGTTGCTGTCCAAGAATCA
Product: adenine specific DNA-methyltransferase
Products: NA
Alternate protein names: M.EcaI; Adenine-specific methyltransferase EcaI [H]
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MARQPKEAYDLTDAEKRDLIQLIQEGKALPEKYRFILFEDKREVELVWNGKSREVCTTVLPFQSLEHVDEPRLEKPELGT MDLFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIEDAGGLKLIYIDPPFDVGADFSMDIEIGGETFHKEPNLLEQ IAYRDTWGRGADSFISMVYERLILMRDLLADDGSIYVHMGKTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGAS HFGRTTETILLFRKSEKGIWNPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDGPGGAAKGNPYYDFLGVKGYWRYSFET MTKLYEQGEIVLSSTGKSLSRKKFLKDAEGTPVVDLWDEVNRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFF CGSGTTAAVAEKLGRKWIATDLGKFGVHTTRKRMIGVQRQLKDSGKPFRAFEVLNLGRYERQAYLNVGGRLNGHQKEQLL AQKEREFRDLILRAYKAQPLEGESFFHGKNAGRLVVIGPINLPVGRLFVEEVITECRKRGASRVDMLAFEFEMGLFPAVL EEAKQKGIDLVPKQIPPEVFDKRAVEKGQVVFFDISFVEATPRYAKKDKFTLQIELTDFSVYYTQGAAEAAAASLKNGKS QVVCEQGQLIKLSKDKDGVVTREILTKNWTDWVDYWAVDFDYMSRKEIIKVAKGAGIDGSLPGFEPPQGELTLPEFEERW TGGYIFENEWQSFRTRKSRDLEMISAPHTYTQAGRYTVAVKVIDIFGNDTMVLVPVSVG
Sequences:
>Translated_779_residues MARQPKEAYDLTDAEKRDLIQLIQEGKALPEKYRFILFEDKREVELVWNGKSREVCTTVLPFQSLEHVDEPRLEKPELGT MDLFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIEDAGGLKLIYIDPPFDVGADFSMDIEIGGETFHKEPNLLEQ IAYRDTWGRGADSFISMVYERLILMRDLLADDGSIYVHMGKTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGAS HFGRTTETILLFRKSEKGIWNPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDGPGGAAKGNPYYDFLGVKGYWRYSFET MTKLYEQGEIVLSSTGKSLSRKKFLKDAEGTPVVDLWDEVNRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFF CGSGTTAAVAEKLGRKWIATDLGKFGVHTTRKRMIGVQRQLKDSGKPFRAFEVLNLGRYERQAYLNVGGRLNGHQKEQLL AQKEREFRDLILRAYKAQPLEGESFFHGKNAGRLVVIGPINLPVGRLFVEEVITECRKRGASRVDMLAFEFEMGLFPAVL EEAKQKGIDLVPKQIPPEVFDKRAVEKGQVVFFDISFVEATPRYAKKDKFTLQIELTDFSVYYTQGAAEAAAASLKNGKS QVVCEQGQLIKLSKDKDGVVTREILTKNWTDWVDYWAVDFDYMSRKEIIKVAKGAGIDGSLPGFEPPQGELTLPEFEERW TGGYIFENEWQSFRTRKSRDLEMISAPHTYTQAGRYTVAVKVIDIFGNDTMVLVPVSVG >Mature_778_residues ARQPKEAYDLTDAEKRDLIQLIQEGKALPEKYRFILFEDKREVELVWNGKSREVCTTVLPFQSLEHVDEPRLEKPELGTM DLFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIEDAGGLKLIYIDPPFDVGADFSMDIEIGGETFHKEPNLLEQI AYRDTWGRGADSFISMVYERLILMRDLLADDGSIYVHMGKTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGASH FGRTTETILLFRKSEKGIWNPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDGPGGAAKGNPYYDFLGVKGYWRYSFETM TKLYEQGEIVLSSTGKSLSRKKFLKDAEGTPVVDLWDEVNRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFC GSGTTAAVAEKLGRKWIATDLGKFGVHTTRKRMIGVQRQLKDSGKPFRAFEVLNLGRYERQAYLNVGGRLNGHQKEQLLA QKEREFRDLILRAYKAQPLEGESFFHGKNAGRLVVIGPINLPVGRLFVEEVITECRKRGASRVDMLAFEFEMGLFPAVLE EAKQKGIDLVPKQIPPEVFDKRAVEKGQVVFFDISFVEATPRYAKKDKFTLQIELTDFSVYYTQGAAEAAAASLKNGKSQ VVCEQGQLIKLSKDKDGVVTREILTKNWTDWVDYWAVDFDYMSRKEIIKVAKGAGIDGSLPGFEPPQGELTLPEFEERWT GGYIFENEWQSFRTRKSRDLEMISAPHTYTQAGRYTVAVKVIDIFGNDTMVLVPVSVG
Specific function: This methylase recognizes the double-stranded sequence GGTNACC, causes specific methylation on A-5 on both strands and protects the DNA from cleavage by the EcaI endonuclease [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=80, Percent_Identity=46.25, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 88357; Mature: 88225
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00092 N6_MTASE ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQPKEAYDLTDAEKRDLIQLIQEGKALPEKYRFILFEDKREVELVWNGKSREVCTTVL CCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHH PFQSLEHVDEPRLEKPELGTMDLFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIE CHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH DAGGLKLIYIDPPFDVGADFSMDIEIGGETFHKEPNLLEQIAYRDTWGRGADSFISMVYE HCCCEEEEEECCCCCCCCCEEEEEEECCHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH RLILMRDLLADDGSIYVHMGKTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGAS HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHH HFGRTTETILLFRKSEKGIWNPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDGPGGAAK HCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHCCCCEEEEEEECCCCCCCC GNPYYDFLGVKGYWRYSFETMTKLYEQGEIVLSSTGKSLSRKKFLKDAEGTPVVDLWDEV CCCCEEEECCCEEEEEHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEHHHHHH NRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRKWIAT HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHH DLGKFGVHTTRKRMIGVQRQLKDSGKPFRAFEVLNLGRYERQAYLNVGGRLNGHQKEQLL HHHHHCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHEEEECCCCCCCHHHHHHH AQKEREFRDLILRAYKAQPLEGESFFHGKNAGRLVVIGPINLPVGRLFVEEVITECRKRG HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC ASRVDMLAFEFEMGLFPAVLEEAKQKGIDLVPKQIPPEVFDKRAVEKGQVVFFDISFVEA CCHHEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEC TPRYAKKDKFTLQIELTDFSVYYTQGAAEAAAASLKNGKSQVVCEQGQLIKLSKDKDGVV CCCCCCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCH TREILTKNWTDWVDYWAVDFDYMSRKEIIKVAKGAGIDGSLPGFEPPQGELTLPEFEERW HHHHHHCCCHHHHHHHEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHC TGGYIFENEWQSFRTRKSRDLEMISAPHTYTQAGRYTVAVKVIDIFGNDTMVLVPVSVG CCCEEECCCHHHHHHHCCCCCEEEECCCCHHCCCCEEEEEEEEEEECCCEEEEEEECCC >Mature Secondary Structure ARQPKEAYDLTDAEKRDLIQLIQEGKALPEKYRFILFEDKREVELVWNGKSREVCTTVL CCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHH PFQSLEHVDEPRLEKPELGTMDLFDTRGRQLKGWTNKLIWGDNKLILSSLKSGALRQQIE CHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH DAGGLKLIYIDPPFDVGADFSMDIEIGGETFHKEPNLLEQIAYRDTWGRGADSFISMVYE HCCCEEEEEECCCCCCCCCEEEEEEECCHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH RLILMRDLLADDGSIYVHMGKTVAHYVRLACEEVFGSANIVNEITWKRSHAHGDTGQGAS HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHH HFGRTTETILLFRKSEKGIWNPQHKPYTDDVLARDYKYTEEKTGERYRLMPVDGPGGAAK HCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHCCCCEEEEEEECCCCCCCC GNPYYDFLGVKGYWRYSFETMTKLYEQGEIVLSSTGKSLSRKKFLKDAEGTPVVDLWDEV CCCCEEEECCCEEEEEHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEHHHHHH NRISPTSSERLDYPTQKPEALLERIIKASSNEGDLVADFFCGSGTTAAVAEKLGRKWIAT HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHH DLGKFGVHTTRKRMIGVQRQLKDSGKPFRAFEVLNLGRYERQAYLNVGGRLNGHQKEQLL HHHHHCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHEEEECCCCCCCHHHHHHH AQKEREFRDLILRAYKAQPLEGESFFHGKNAGRLVVIGPINLPVGRLFVEEVITECRKRG HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC ASRVDMLAFEFEMGLFPAVLEEAKQKGIDLVPKQIPPEVFDKRAVEKGQVVFFDISFVEA CCHHEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEC TPRYAKKDKFTLQIELTDFSVYYTQGAAEAAAASLKNGKSQVVCEQGQLIKLSKDKDGVV CCCCCCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCH TREILTKNWTDWVDYWAVDFDYMSRKEIIKVAKGAGIDGSLPGFEPPQGELTLPEFEERW HHHHHHCCCHHHHHHHEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHC TGGYIFENEWQSFRTRKSRDLEMISAPHTYTQAGRYTVAVKVIDIFGNDTMVLVPVSVG CCCEEECCCHHHHHHHCCCCCEEEECCCCHHCCCCEEEEEEEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2183182 [H]