| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is sthA [C]
Identifier: 74317493
GI number: 74317493
Start: 1562054
End: 1563490
Strand: Reverse
Name: sthA [C]
Synonym: Tbd_1475
Alternate gene names: 74317493
Gene position: 1563490-1562054 (Counterclockwise)
Preceding gene: 74317494
Following gene: 74317492
Centisome position: 53.73
GC content: 70.7
Gene sequence:
>1437_bases ATGCCCGTGTTGCATCGCCCGGAGCAGGCGCTCACCGTGACCCTGCCGCCGCGCAGCGCGCAGGTGGCCGCCGATTGCGA CGTGCTCGTCGTCGGCGGCGGCCCGGCCGGCATCGGCGCCGCGCTCGGCGCGGCGGCGGCCGGCGCGCGCACCGTGCTGG TCGAGCGCTACGGATTTCTCGGCGGCAACGCGACCGCGGCGCTCGTGATGCCGCTGATGTCCTTCCACACGAGCCGACCG CAGATCGAGCAATCCGGCGCGCATACGCTCCTGCCGACCGACCACGGCCCGGGAACGCCGGTCATCGCCGGCGCGGTACG ACAGTTCATCGCGCGCCTGCTCGCCCACGGCGGCGCGGTGCCGCCGGATCTGAGCACCGGCTACACGGTGCCCTTCGACC CCGAGCTGTTCAAGCTCACTGCGCTCGAACTGCTCGACGAGGCCGGCGTGTCCTTCCTCTTCCACGCCTTCGCGTCGGGC GTGCTCGGCGAGGGACGCTGCGGCGGGGTCGTGTTCGAAACCAAGGGCGGCCCGCAGGTCGTGCGCGCGCGCATGATCGT CGACGCAACCGGGGACGGCGACATCGCGGTGGCGGCCGGCGCGCCTTACGAGATCGGGCGCGAGGCCGACGGCATGGTGC AGCCGATGACGCTGATGTTTCGCGTCGCCGATTTCGAGCGCGTCGGCTTCGAGACCTATGTCGCCGCGCACCCCGATCAA TGGCGCGGCGTGCACGGCTTGTGGGATCTCGTCGCACGTGCGACCGCGGCGGGCGACCTCGACCTGCCGCGTGAAGACAT CCTGCTGTTCGCGACCCCGCATCTGCATGAAGTCAGCGTCAACAGCACGCGCGTCACGGCCCATGACCGAAGGCTGCTCG GCAGCGACCCCTTCGACCTCAGCTACGCGGAATGGGTGAGCCGCGGGCAGATGCGACAGGTCGCCGCATTCCTGCGCAAG TACGTGCCGGGGTTCGAGGAGTCGTACGCGGTGCAAAGCGGCGTCCAGATCGGCGTGCGCGAGACGCGGCGAATACGCGG CGACTATCGCCTGAGCGCCGACGACGTGCTCACGGCACGCAAGTTCGGCGACGTCATCGCGCGCAGCACCTATCCGATCG ACATTCACAACGCGACCGGCACGGGCACGGTGTTGAAGCGCCTGCCGCCGAACGAGGCCTACGACATTCCGCTGCGCTGC CTGCTGCCGCAGGGGCTCGACAACGTGCTGACCGCCGGGCGCTGCATTTCGGGCGACAGCGAGGCGCACTCGTCCTACCG CGTGATGGTCGTCTGCATGGCGACCGGGCAGGCGGCCGGCGCCTGCGCCGCGCTCGCGGCGCGCGGCAAGACGTCGACAC GCAGCGTCGACCCGGCCGAGGTGCAGCGCGAGCTGCTGCGCCAGGGCGTCAACCTGCGCGAGCTTTCGCTTTTTTGA
Upstream 100 bases:
>100_bases CAGATCGACCGCGCGCTGCCCACGCTGCAGGGCGCGGCGCGCCAGACCCACGAACTCATGCTTCGCGTACTGCGCGGGGA AGACTGAAAGGAGCCTCGCA
Downstream 100 bases:
>100_bases CGCCCGCGGCCGCGCGCGTCCGGGAACCTTGGCGCAGAAAGACGTTCTCGCTAGCTATAGTGAATCGACAAAGTTCATAA GGAGGGGAGGATGCGTGCGT
Product: hypothetical protein
Products: H+; Nicotinamide adenine dinucleotide; Nicotinamide adenine dinucleotide phosphate - reduced [C]
Alternate protein names: Invasion Protein IbeA; Glucose-Inhibited Division Protein A; Fumarate Reductase/Succinate Dehydrogenase Flavoprotein; Dihydrolipoamide Dehydrogenase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Thiamine Biosynthesis Thi4 Protein; Invasion Protein IbeA Family Protein; Protein Involved In Invasion; FAD Dependent Oxidoreductase Domain Protein; Invasion Protein; Pyridine Nucleotide-Disulfide Oxidoreductase Family; tRNA Uridine 5-Carboxymethylaminomethyl GidA
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MPVLHRPEQALTVTLPPRSAQVAADCDVLVVGGGPAGIGAALGAAAAGARTVLVERYGFLGGNATAALVMPLMSFHTSRP QIEQSGAHTLLPTDHGPGTPVIAGAVRQFIARLLAHGGAVPPDLSTGYTVPFDPELFKLTALELLDEAGVSFLFHAFASG VLGEGRCGGVVFETKGGPQVVRARMIVDATGDGDIAVAAGAPYEIGREADGMVQPMTLMFRVADFERVGFETYVAAHPDQ WRGVHGLWDLVARATAAGDLDLPREDILLFATPHLHEVSVNSTRVTAHDRRLLGSDPFDLSYAEWVSRGQMRQVAAFLRK YVPGFEESYAVQSGVQIGVRETRRIRGDYRLSADDVLTARKFGDVIARSTYPIDIHNATGTGTVLKRLPPNEAYDIPLRC LLPQGLDNVLTAGRCISGDSEAHSSYRVMVVCMATGQAAGACAALAARGKTSTRSVDPAEVQRELLRQGVNLRELSLF
Sequences:
>Translated_478_residues MPVLHRPEQALTVTLPPRSAQVAADCDVLVVGGGPAGIGAALGAAAAGARTVLVERYGFLGGNATAALVMPLMSFHTSRP QIEQSGAHTLLPTDHGPGTPVIAGAVRQFIARLLAHGGAVPPDLSTGYTVPFDPELFKLTALELLDEAGVSFLFHAFASG VLGEGRCGGVVFETKGGPQVVRARMIVDATGDGDIAVAAGAPYEIGREADGMVQPMTLMFRVADFERVGFETYVAAHPDQ WRGVHGLWDLVARATAAGDLDLPREDILLFATPHLHEVSVNSTRVTAHDRRLLGSDPFDLSYAEWVSRGQMRQVAAFLRK YVPGFEESYAVQSGVQIGVRETRRIRGDYRLSADDVLTARKFGDVIARSTYPIDIHNATGTGTVLKRLPPNEAYDIPLRC LLPQGLDNVLTAGRCISGDSEAHSSYRVMVVCMATGQAAGACAALAARGKTSTRSVDPAEVQRELLRQGVNLRELSLF >Mature_477_residues PVLHRPEQALTVTLPPRSAQVAADCDVLVVGGGPAGIGAALGAAAAGARTVLVERYGFLGGNATAALVMPLMSFHTSRPQ IEQSGAHTLLPTDHGPGTPVIAGAVRQFIARLLAHGGAVPPDLSTGYTVPFDPELFKLTALELLDEAGVSFLFHAFASGV LGEGRCGGVVFETKGGPQVVRARMIVDATGDGDIAVAAGAPYEIGREADGMVQPMTLMFRVADFERVGFETYVAAHPDQW RGVHGLWDLVARATAAGDLDLPREDILLFATPHLHEVSVNSTRVTAHDRRLLGSDPFDLSYAEWVSRGQMRQVAAFLRKY VPGFEESYAVQSGVQIGVRETRRIRGDYRLSADDVLTARKFGDVIARSTYPIDIHNATGTGTVLKRLPPNEAYDIPLRCL LPQGLDNVLTAGRCISGDSEAHSSYRVMVVCMATGQAAGACAALAARGKTSTRSVDPAEVQRELLRQGVNLRELSLF
Specific function: Conversion Of NADPH, Generated By Peripheral Catabolic Pathways, To NADH, Which Can Enter The Respiratory Chain For Energy Generation. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.6.1.1 [C]
Molecular weight: Translated: 50898; Mature: 50766
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS00338 SOMATOTROPIN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLHRPEQALTVTLPPRSAQVAADCDVLVVGGGPAGIGAALGAAAAGARTVLVERYGFL CCCCCCCCCEEEEEECCCCCCEECCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCC GGNATAALVMPLMSFHTSRPQIEQSGAHTLLPTDHGPGTPVIAGAVRQFIARLLAHGGAV CCCHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC PPDLSTGYTVPFDPELFKLTALELLDEAGVSFLFHAFASGVLGEGRCGGVVFETKGGPQV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHH VRARMIVDATGDGDIAVAAGAPYEIGREADGMVQPMTLMFRVADFERVGFETYVAAHPDQ EEEEEEEEECCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHH WRGVHGLWDLVARATAAGDLDLPREDILLFATPHLHEVSVNSTRVTAHDRRLLGSDPFDL CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCEEEEHHHHHHCCCCCCCC SYAEWVSRGQMRQVAAFLRKYVPGFEESYAVQSGVQIGVRETRRIRGDYRLSADDVLTAR CHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCEECHHHHHHHCCCEEECHHHHHHHH KFGDVIARSTYPIDIHNATGTGTVLKRLPPNEAYDIPLRCLLPQGLDNVLTAGRCISGDS HHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCC EAHSSYRVMVVCMATGQAAGACAALAARGKTSTRSVDPAEVQRELLRQGVNLRELSLF CCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure PVLHRPEQALTVTLPPRSAQVAADCDVLVVGGGPAGIGAALGAAAAGARTVLVERYGFL CCCCCCCCEEEEEECCCCCCEECCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCC GGNATAALVMPLMSFHTSRPQIEQSGAHTLLPTDHGPGTPVIAGAVRQFIARLLAHGGAV CCCHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC PPDLSTGYTVPFDPELFKLTALELLDEAGVSFLFHAFASGVLGEGRCGGVVFETKGGPQV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHH VRARMIVDATGDGDIAVAAGAPYEIGREADGMVQPMTLMFRVADFERVGFETYVAAHPDQ EEEEEEEEECCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHH WRGVHGLWDLVARATAAGDLDLPREDILLFATPHLHEVSVNSTRVTAHDRRLLGSDPFDL CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCEEEEHHHHHHCCCCCCCC SYAEWVSRGQMRQVAAFLRKYVPGFEESYAVQSGVQIGVRETRRIRGDYRLSADDVLTAR CHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCEECHHHHHHHCCCEEECHHHHHHHH KFGDVIARSTYPIDIHNATGTGTVLKRLPPNEAYDIPLRCLLPQGLDNVLTAGRCISGDS HHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCC EAHSSYRVMVVCMATGQAAGACAALAARGKTSTRSVDPAEVQRELLRQGVNLRELSLF CCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: 2'-AMP; FAD; p-Hydroxymercuribenzoate [C]
Metal ions: Ca2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: H+; Nicotinamide adenine dinucleotide - reduced; Nicotinamide adenine dinucleotide phosphate [C]
Specific reaction: (2) H+ (Extracellular) + Nicotinamide adenine dinucleotide - reduced + Nicotinamide adenine dinucleotide phosphate --> (2) H+ + Nicotinamide adenine dinucleotide + Nicotinamide adenine dinucleotide phosphate - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: p-Hydroxy mercuribenzoate reducedsubstrate, [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA