Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is ytxB [H]

Identifier: 74317492

GI number: 74317492

Start: 1559811

End: 1561955

Strand: Reverse

Name: ytxB [H]

Synonym: Tbd_1474

Alternate gene names: 74317492

Gene position: 1561955-1559811 (Counterclockwise)

Preceding gene: 74317493

Following gene: 74317491

Centisome position: 53.68

GC content: 68.62

Gene sequence:

>2145_bases
GTGGCGCGCACCCGGGCAATGGGCAGGCTAGTCGAAGGAAAAAACTGCTGGCGTTACGAACATGCGAACCGAGTCGCCTT
CCTCGTCGACGGCGCGGCCTACTTCGACGCGTTCGGCCGTGCTGCGTTGCGCGCGCAGCGCTCGATCCTGATCGTCGGCT
GGGATTTCAACAGCCGCACGCGCCTGTGGCACGACGACGCGCCACGCGGCGTGCCGCCGGTGCTCGGCGACTTCCTGGAT
TTTCTCGTCAAGCGCAATCACGCGCTGCAGGTCCACATCCTCGACTGGGATTTTCCGATGATCTACGCGGTCGACCGCGA
GGCGCCGCCGCTCTTCGGACTCGGCTGGCAGCCGCGTCATCACATCCATTTTCATTTCGACAGCCATTTCCCGGTCGGCG
GATCGCATCATCAGAAGATCGTCGTGATCGACGACGCGGTCGCCTTCGTCGGCGGCATCGATCTCGCGGCGGACCGCTGG
GACACGCCCGAGCACCGCGCCGACGACCCGCGCCGCATGCGCGGCGACGCCGCCTACGGCCCGGTGCACGACGTGATGAT
CGCGGTCGACGGCGACGCAGCCGCTGCGCTCGGCGATCTCGCTCGCACGCGCTGGCTGCGCGGAACCGGCGAGCGGCTTC
ATGCCCACCCCGGCGAAGGTGATCCGTGGCCGGCGGAACTCGCGCCCGAGCTCGTCGACGTGCACGTCGGGATCGCGCGC
ACCGAACCCGAGTACGACGGCCTGCCCGAGGTGCGCGAGGTCGAGGCGCTGTATCTCGACATGCTCGACGCGGCGAAAAA
GCTGATCTACATCGAGAACCAGTATTTCACGTCGCTGCGCGTCGGCGCCTGGCTCGAGGAACGGCTGCGCTGCGAAGACT
GCCCGGAAATCGTGATCGTGCTGCGGCGCTCGTCCGACGGCTGGCTCGAAGGGCCGACGATGGGCACGCTGCGCAGCCAG
CTGCTCGAACGCCTGCGCCGCGCCGACCACCATGGCCGGCTGCACGTCTACTATCCCGACGTGCCGGGCCTCGGCGAGCG
CAGCATCAACGTGCATGCCAAGCTGTGTATCGTCGACGATGAGATCGTGCGCGTCGGCTCGGCGAATCTCAACAATCGCT
CGATGGGTTTCGACACCGAATGCGATCTCGCGATCGAGGCCGAGGGCAATGCGAATGTGCGTGCGGCGATCGCCGCGTTC
CGCGACCGGCTGCTCGCCGAACATCTCGACGTCAGCCCGCGCGAGGTCGCCGCCGCGTTCGAGCGCGAAGCGACCGCGGC
CAAGGCCGTCGACGCGCTGGCACACGGCGAGCGGCGCCTGCTGCCCTTGAGCTCCGACGTCTGGTCCAGTTCGCTCGCGC
CGCTCGCCGAACTTGCCGATCTCGAGCGACCGGTCGCTCCGGAAGAGCTGATCAGCCAGTTCTCTCCTGACGCCCCGGTC
GACGAAAAACGCGGGCGGCCGCTGCTCGGCGTGCTCGTGGTGCTCGTGGTTTTCGGCGGCCTGTTTGCGCTCTGGCGCTG
GACCCCGCTGTCCGAATACGTCACGCCGACTGCCGTCGCCGGCTGGGCCGACCTGCTGGCGGCCGAGCCGGCCGGCCCCT
TGATCGTGATCGGCGCCTACACGCTGGCGACGTTCACGATGTTTCCGCGGCCGTTGATCACGCTCGCCGCGGTGCTGGCC
TATGGCCCCTTGCAGGGCTTCGCCTATGCGATGGCCGGGATGCTGACCGCGGCGATGGTGACGTATTACGGCGGGCGCGC
ACTGAGCCGCGACACGGTACGGCGCGTCGCCGGCGCGCGGCTCAACCGCCTGTCGCGCGAACTGCGGCGGCGCGGCCTGC
TTTCGGTCGTCGCGGTGCGGCTCGTGCCGATCGCCCCGTTCATCGTCGTCAACATGGTGGCGGGCGCGGCGCGCATCCGC
GTCGACCATTACTTCATCGGCACCGCACTCGGCATACTGCCGGGTGCGCTCGTCGCGACGATCTTCGGCGGGCAGCTGCA
CAGTGCGCTGCGCGATCCGTCGAGCATCAACTACGCGCTGGTCGGCATCGTCGTCGCGGCCGCGCTCGTGGCCTTCTTCG
TCCTGCGCAAGTGGTTGCGCAGGCAACTCGCCGCCGACGGGAAAGCGGACGCCGATGTGGGTTAG

Upstream 100 bases:

>100_bases
GACGCCCGCGGCCGCGCGCGTCCGGGAACCTTGGCGCAGAAAGACGTTCTCGCTAGCTATAGTGAATCGACAAAGTTCAT
AAGGAGGGGAGGATGCGTGC

Downstream 100 bases:

>100_bases
CCGCAAGGGTCACAGCTTCTCGGTGGCTTCCTACAACATTCACCAGTGCGTCGGCGTCGACCGCCGCCGTGATGCCGCAC
GCATCGCAACGGTGATCCGC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: ORF-213 [H]

Number of amino acids: Translated: 714; Mature: 713

Protein sequence:

>714_residues
MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLD
FLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRW
DTPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR
TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQ
LLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAF
RDRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV
DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLA
YGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIR
VDHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG

Sequences:

>Translated_714_residues
MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLD
FLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRW
DTPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR
TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQ
LLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAF
RDRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV
DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLA
YGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIR
VDHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG
>Mature_713_residues
ARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLDF
LVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWD
TPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIART
EPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQL
LERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFR
DRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPVD
EKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLAY
GPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRV
DHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 78557; Mature: 78426

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRT
CCCHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
RLWHDDAPRGVPPVLGDFLDFLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRH
CEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
HIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWDTPEHRADDPRRMRGDAAYG
EEEEEECCCCCCCCCCCCEEEEEECHHHHHCCCHHCCCCCCCCCCCCCCHHHHCCCCCCC
PVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR
CCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHEEEEEEE
TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEE
LRRSSDGWLEGPTMGTLRSQLLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDD
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECH
EIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFRDRLLAEHLDVSPREVAAAF
HHHEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV
HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAY
CHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEHH
TLATFTMFPRPLITLAAVLAYGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGAR
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRVDHYFIGTALGILPGALVAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEHHHHHHHHHHHHHHHHHHH
IFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRT
CCHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
RLWHDDAPRGVPPVLGDFLDFLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRH
CEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
HIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWDTPEHRADDPRRMRGDAAYG
EEEEEECCCCCCCCCCCCEEEEEECHHHHHCCCHHCCCCCCCCCCCCCCHHHHCCCCCCC
PVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR
CCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHEEEEEEE
TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEE
LRRSSDGWLEGPTMGTLRSQLLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDD
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECH
EIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFRDRLLAEHLDVSPREVAAAF
HHHEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV
HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAY
CHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEHH
TLATFTMFPRPLITLAAVLAYGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGAR
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRVDHYFIGTALGILPGALVAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEHHHHHHHHHHHHHHHHHHH
IFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3027671; 8969504; 9387221; 9384377 [H]