| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is narK [H]
Identifier: 74317420
GI number: 74317420
Start: 1483072
End: 1484748
Strand: Direct
Name: narK [H]
Synonym: Tbd_1402
Alternate gene names: 74317420
Gene position: 1483072-1484748 (Clockwise)
Preceding gene: 74317419
Following gene: 74317421
Centisome position: 50.97
GC content: 64.04
Gene sequence:
>1677_bases ATGAGTCTCAGAAACAAGCAGCACGGCGCCGCGGGCGTCGCCGTCGGGGGACGCGAGCGCGAGCAGGTTCCCGCGACCAT TCCCGAGTGGGACGTCGAGAACAATGTGTTCTGGGAATCGACGGGCAAGCGCATCGCCAACCGCAACCTGTGGATTTCGA TCCCGGCCCTGTTGTGCGGATTCGCGGTGTGGGGCATGTGGGGCATCATCACCGTACAGATGCTCAATCTCGGGTTCCCC TTCTCCAAGGAGGAGCTCTTCACGCTCACCGCGATCGCCGGCATCTCGGGCGCCACGATGCGGATTCCGTCGTCGTTCTT CATTCGTCTCGCGGGCGGGCGCAACGTCATTTTCCTGACCACGGCGATGCTGCTCGCGCCGGCGATCGGCACGGGCATCG TGCTGCAACACCCCGACTGGCCCTTGTGGACCTTCCAGCTAATGGCGCTGTGGTCGGGCGTCGGCGGCGGCAACTTCGCC AGCTCGATGTCGAACATCAGCACCTTCTTCCCCAAGCGTCTCCAGGGCACGGCGCTCGGCCTCAACGCGGGCCTGGGCAA CTTCGGCGTAACCACGATGCAGGTCGTGATTCCGCTGGTCATGACTCTCGGCATGCTCGGCAGCTACGGCGGCGAATCGA TGACGCTGGTCAAGGACAGCGGCTGGATCCTCGGCAAGATCGCCGCGGGCACCGAGACCTACGTGCAGAACGCCGGCTTC GCCTGGGTGCTGTCGCTGGTGCCGCTGGCCATCCTGGCCTGGTTCGGGATGAACAACCTGAAGCCGATCTCGCCGGACGC GCATCACACGATCGCGTCCTTCGCCAAGGTCACCTACCTCTACACGCTGGCCTTCCTGCCGGCGATCTTCATGCTCTACC TGTATCTGCCGGCGCCGACCGGGCTCGGCGTACTCAACATGTGGGTCGCCATTCCGCTCGATATCCTCGCGGCGCTGCTG GTGATGAAGCTTGCAGCGTTCGGCACCATGAAGGAAAACGTCGCCAAGCAGTTCGCAATCTTCAAGAACAAGCACACCTG GTCCCTGACCGCGCTGTACATCGTCACCTTCGGCTCGTTCATCGGCTTCTCGATGGCGCTGCCGTTGTCGATCACGGTCA TCTTCGGCGACTCGCACGTGCTCGATGCGGCAACCGGCGTCTGGACCCATAGCAAGAACCCCAACGCGCCCTCGGCCTTC ACCTATGCGTGGATCGGCCCCTTCGTCGGCGCGGCGATGCGCCCGATCGGCGGCTGGATTTCGGACAAGGTCGGCGGATC GATCGTCACCCAGATCATCTCCGCCGTGATGGTCGCCGCCTCGGCCTACGCGGGCTGGATCATGATGCAGGCCTTCCACT CGGCCACGCCCGAAGTCTATTTCACCCAGTTCCTCGTTACCTTCATCGTGCTCTTTGCCGCCACCGGTGTTGGCAACGGC TCGACCTTCCGCACCGTCGGCGTGATCTTCGACCGCGTGCAGGCGGGGCCGGTGCTCGGCTGGACGTCGGCGGTCGCCGC CTACGGCGCGTTCATCGCCCCGGTGGTGATCGGCGATCAGATCAAGGCCGGCTCGCCGGAGAACGCGATGTACGGCTTCG CCGCCTTCTATGCCGTGTGCCTGTTCGTGAACTGGTGGTTCTACCTGCGCAAGCACGCCTACATCAAGAACCCCTGA
Upstream 100 bases:
>100_bases GTACGCGAGATGGACGCGGCGGCGCGGGGCGCGAAGCGCGTCATCGCCGCGGACGTCATGGAGTAACTGTGTCGATCAGC CGAATGGAGGGCAAGGGATC
Downstream 100 bases:
>100_bases TCGCAGCCTGAAACCCCAAGGAGCAAGAACAATGAGTCACTTTCTCGACCGACTGACCTACTTCACCCGCCAGCGCGAGT CGTTTTCCGGCGATCACGGC
Product: nitrate/nitrite antiporter
Products: NA
Alternate protein names: Nitrite facilitator 1 [H]
Number of amino acids: Translated: 558; Mature: 557
Protein sequence:
>558_residues MSLRNKQHGAAGVAVGGREREQVPATIPEWDVENNVFWESTGKRIANRNLWISIPALLCGFAVWGMWGIITVQMLNLGFP FSKEELFTLTAIAGISGATMRIPSSFFIRLAGGRNVIFLTTAMLLAPAIGTGIVLQHPDWPLWTFQLMALWSGVGGGNFA SSMSNISTFFPKRLQGTALGLNAGLGNFGVTTMQVVIPLVMTLGMLGSYGGESMTLVKDSGWILGKIAAGTETYVQNAGF AWVLSLVPLAILAWFGMNNLKPISPDAHHTIASFAKVTYLYTLAFLPAIFMLYLYLPAPTGLGVLNMWVAIPLDILAALL VMKLAAFGTMKENVAKQFAIFKNKHTWSLTALYIVTFGSFIGFSMALPLSITVIFGDSHVLDAATGVWTHSKNPNAPSAF TYAWIGPFVGAAMRPIGGWISDKVGGSIVTQIISAVMVAASAYAGWIMMQAFHSATPEVYFTQFLVTFIVLFAATGVGNG STFRTVGVIFDRVQAGPVLGWTSAVAAYGAFIAPVVIGDQIKAGSPENAMYGFAAFYAVCLFVNWWFYLRKHAYIKNP
Sequences:
>Translated_558_residues MSLRNKQHGAAGVAVGGREREQVPATIPEWDVENNVFWESTGKRIANRNLWISIPALLCGFAVWGMWGIITVQMLNLGFP FSKEELFTLTAIAGISGATMRIPSSFFIRLAGGRNVIFLTTAMLLAPAIGTGIVLQHPDWPLWTFQLMALWSGVGGGNFA SSMSNISTFFPKRLQGTALGLNAGLGNFGVTTMQVVIPLVMTLGMLGSYGGESMTLVKDSGWILGKIAAGTETYVQNAGF AWVLSLVPLAILAWFGMNNLKPISPDAHHTIASFAKVTYLYTLAFLPAIFMLYLYLPAPTGLGVLNMWVAIPLDILAALL VMKLAAFGTMKENVAKQFAIFKNKHTWSLTALYIVTFGSFIGFSMALPLSITVIFGDSHVLDAATGVWTHSKNPNAPSAF TYAWIGPFVGAAMRPIGGWISDKVGGSIVTQIISAVMVAASAYAGWIMMQAFHSATPEVYFTQFLVTFIVLFAATGVGNG STFRTVGVIFDRVQAGPVLGWTSAVAAYGAFIAPVVIGDQIKAGSPENAMYGFAAFYAVCLFVNWWFYLRKHAYIKNP >Mature_557_residues SLRNKQHGAAGVAVGGREREQVPATIPEWDVENNVFWESTGKRIANRNLWISIPALLCGFAVWGMWGIITVQMLNLGFPF SKEELFTLTAIAGISGATMRIPSSFFIRLAGGRNVIFLTTAMLLAPAIGTGIVLQHPDWPLWTFQLMALWSGVGGGNFAS SMSNISTFFPKRLQGTALGLNAGLGNFGVTTMQVVIPLVMTLGMLGSYGGESMTLVKDSGWILGKIAAGTETYVQNAGFA WVLSLVPLAILAWFGMNNLKPISPDAHHTIASFAKVTYLYTLAFLPAIFMLYLYLPAPTGLGVLNMWVAIPLDILAALLV MKLAAFGTMKENVAKQFAIFKNKHTWSLTALYIVTFGSFIGFSMALPLSITVIFGDSHVLDAATGVWTHSKNPNAPSAFT YAWIGPFVGAAMRPIGGWISDKVGGSIVTQIISAVMVAASAYAGWIMMQAFHSATPEVYFTQFLVTFIVLFAATGVGNGS TFRTVGVIFDRVQAGPVLGWTSAVAAYGAFIAPVVIGDQIKAGSPENAMYGFAAFYAVCLFVNWWFYLRKHAYIKNP
Specific function: Involved in excretion of nitrite produced by the dissimilatory reduction of nitrate [H]
COG id: COG2223
COG function: function code P; Nitrate/nitrite transporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family [H]
Homologues:
Organism=Escherichia coli, GI1787475, Length=236, Percent_Identity=43.6440677966102, Blast_Score=172, Evalue=4e-44, Organism=Escherichia coli, GI1787743, Length=232, Percent_Identity=43.1034482758621, Blast_Score=162, Evalue=5e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004737 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 60163; Mature: 60032
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRNKQHGAAGVAVGGREREQVPATIPEWDVENNVFWESTGKRIANRNLWISIPALLCG CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCEEEEHHHHHHH FAVWGMWGIITVQMLNLGFPFSKEELFTLTAIAGISGATMRIPSSFFIRLAGGRNVIFLT HHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHCCCCCEEECCCEEEEEECCCCEEEHHH TAMLLAPAIGTGIVLQHPDWPLWTFQLMALWSGVGGGNFASSMSNISTFFPKRLQGTALG HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE LNAGLGNFGVTTMQVVIPLVMTLGMLGSYGGESMTLVKDSGWILGKIAAGTETYVQNAGF EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCHHHHHCCCH AWVLSLVPLAILAWFGMNNLKPISPDAHHTIASFAKVTYLYTLAFLPAIFMLYLYLPAPT HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GLGVLNMWVAIPLDILAALLVMKLAAFGTMKENVAKQFAIFKNKHTWSLTALYIVTFGSF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IGFSMALPLSITVIFGDSHVLDAATGVWTHSKNPNAPSAFTYAWIGPFVGAAMRPIGGWI HHHHEECCEEEEEEECCCCHHHHHCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCHH SDKVGGSIVTQIISAVMVAASAYAGWIMMQAFHSATPEVYFTQFLVTFIVLFAATGVGNG HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC STFRTVGVIFDRVQAGPVLGWTSAVAAYGAFIAPVVIGDQIKAGSPENAMYGFAAFYAVC CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH LFVNWWFYLRKHAYIKNP HHHHHHHHHHHCCCCCCC >Mature Secondary Structure SLRNKQHGAAGVAVGGREREQVPATIPEWDVENNVFWESTGKRIANRNLWISIPALLCG CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCEEEEHHHHHHH FAVWGMWGIITVQMLNLGFPFSKEELFTLTAIAGISGATMRIPSSFFIRLAGGRNVIFLT HHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHCCCCCEEECCCEEEEEECCCCEEEHHH TAMLLAPAIGTGIVLQHPDWPLWTFQLMALWSGVGGGNFASSMSNISTFFPKRLQGTALG HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE LNAGLGNFGVTTMQVVIPLVMTLGMLGSYGGESMTLVKDSGWILGKIAAGTETYVQNAGF EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCHHHHHCCCH AWVLSLVPLAILAWFGMNNLKPISPDAHHTIASFAKVTYLYTLAFLPAIFMLYLYLPAPT HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GLGVLNMWVAIPLDILAALLVMKLAAFGTMKENVAKQFAIFKNKHTWSLTALYIVTFGSF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IGFSMALPLSITVIFGDSHVLDAATGVWTHSKNPNAPSAFTYAWIGPFVGAAMRPIGGWI HHHHEECCEEEEEEECCCCHHHHHCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCHH SDKVGGSIVTQIISAVMVAASAYAGWIMMQAFHSATPEVYFTQFLVTFIVLFAATGVGNG HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC STFRTVGVIFDRVQAGPVLGWTSAVAAYGAFIAPVVIGDQIKAGSPENAMYGFAAFYAVC CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH LFVNWWFYLRKHAYIKNP HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2668029; 8905232; 9278503; 2657652 [H]