| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317309
Identifier: 74317309
GI number: 74317309
Start: 1361799
End: 1363331
Strand: Direct
Name: 74317309
Synonym: Tbd_1291
Alternate gene names: NA
Gene position: 1361799-1363331 (Clockwise)
Preceding gene: 74317308
Following gene: 74317310
Centisome position: 46.8
GC content: 64.91
Gene sequence:
>1533_bases ATGAGTGACAACACGAATACTCCGCACGACAGCGACGCGGAGCGGGGAGAGGCCAGCACGCTGAGCCGCCGCGAAATGCT GAAGAGCCTGGGAATGGCTGGCGCCGTGTGCGCCGTCGGCCTGACCGCCGTCAAGGGGGCACAAGCGGCGCTGCCGACCT TGTCCACGCCGTTCTCGGTGGCGACGAACGAAGGCTTCCCGCTGCCGAAAAGCCCGGAAGAGATCTGGTCGCTCGACTAC GCCGGCAACCTGTTTCCCGGCATGCGCAACGGCCCCGCGCTGTCCGCGTTTTTCTACCCCGCGACCGGCATGTACATCGA GGACAACGGCTCGATCAAGGTCGCCGACGCGCGCAATTCGCTGATCCGCAACATCTCCAACCTCGGCGACGTGACGATCT TCAGCGGCAGCATGCAGCAGTATCCGTTCAAGGACGGCAGCGCCGTCGACACGAACTTCAACAGCCCGAACGACATCGAC AAGCTCAGCGACGGCACCTACGTCGTGGGTGATCGCGAGAACAACGCGATCCGCCGCGTGTTCGCCGACGGCTCGGTCAA GACGATCGCCGGCCAGGGCAACTGCAAGAACAAGTACAACGGCGACCAGAGCATCGGCACCCAGGCGCTGCTCAACCGCC CGTTGACGCTGACCGTCGCCCGCGAGAACACCGCGTGGCACACCGTCGACACGGTCTACTTCTGCGACCGCGACAACCAG CTGATCCGCAAGCTCGTCCCCAACGGCGACGGCACCTTCGCCGTCGTCACCGTCGCCGGCACGCCGCCGACGCCCGGTGC CGACCCCTGCGGCGCCTTGACGTATTACCCCGGCCGCGTCGACGGCCCGACCGCCACGGCGAAATTCCGCGGCGCCTGCG GCATCGTGCTGAGCCCCGATCAGCGTTACCTCTACATCGCCGAACGCGACAACAACATCGTTCGCTGCATCGACCTGATG AACAACGTCGTCAGCACCTATGCCGGCGTGCTGATGGTCGGCCAGAAGCAGGGCGCTTTCGTCGACGGCCCAGCCAACGA GGCGCGCTTCAACGGCTGCTCGCAGATCGACTACGACAACGCGGGCAACCTCTACGTCGCCGACCGCTTCAACCACGTGA TCCGCAAGATCACGCCGAGCGCCGATCCGATGGTCGGCAAGATGGTGTCGACCTACGCCGGCGTGCCGATGCAGAGCGGC CGCATCAGCGGGCCCGCGAGCAAAGCCAAGTTCTACGAGCCCTGGGGCCTTTCGGTCGACCGCAAGAACAACCTGATCTT CATCGGCGATACGGCGAACAGCCGCGTAGCCGTGATCGGGCCGTACAAGGCGATCTGGGCCGCATTCGTCGAGCGGGTCA ACAAGTCCCGTCTGTTCGAATACCAGCAACTCATGGCGCTGTACCAGAACTACTACCGCGGCGAGCAGATGCGCGATCCG CAGATGCCGAAGTCCTACGCCAGCGAAAGCACGGGCGAATTCAGCGCGCCGGACGGCACGCTGTTCAGCGACGCACCGCG TTCGACCTACTAA
Upstream 100 bases:
>100_bases GATTTTTTCCAAGCGCGTCCCCACGCACCATAGCGCCTCCGAACAACGGGCTCGCCCGATCGGTTTTTGTCAGCCAAGAC CAACTGTTAGAGGAAGCGCA
Downstream 100 bases:
>100_bases AGCCAACCCGAGGGGGCTCGCCCCCCTCGTATTCAACCTCAAGTGGAGCAACGAAAAATGCAAAAAGGGATTCTTTCCCG GGCCGTACTGGCCACCTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NHL Repeat Containing Protein; Serine/Threonine Protein Kinase; YD Repeat Protein; Serine/Threonine-Protein Kinase; SMP-30/Gluconolaconase/LRE Domain-Containing Protein; Fibronectin Type III Domain Protein; Ascorbate-Dependent Monooxygenase; Leucine-Rich Repeat-Containing Protein; YD Repeat-Containing Protein; NHL Repeat Protein; Redoxin Family; Copper Amine Oxidase Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; Ig Domain-Containing Protein; Lipoprotein
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDY AGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDID KLSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLM NNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSG RISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP QMPKSYASESTGEFSAPDGTLFSDAPRSTY
Sequences:
>Translated_510_residues MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDY AGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDID KLSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLM NNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSG RISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP QMPKSYASESTGEFSAPDGTLFSDAPRSTY >Mature_509_residues SDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDYA GNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDK LSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQL IRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLMN NVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGR ISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDPQ MPKSYASESTGEFSAPDGTLFSDAPRSTY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55276; Mature: 55144
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCEE ATNEGFPLPKSPEEIWSLDYAGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNS ECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEHHHHH LIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDKLSDGTYVVGDRENNAIRRV HHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEEECCCCCCEEEE FADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ ECCCCEEEEECCCCCCCCCCCCHHHCHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCHH LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPD HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEECCC QRYLYIAERDNNIVRCIDLMNNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDN CCEEEEEECCCCEEHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCHHHCCCCCCCCCCC AGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGRISGPASKAKFYEPWGLSVD CCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEE RKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC QMPKSYASESTGEFSAPDGTLFSDAPRSTY CCCHHHHCCCCCCCCCCCCCEECCCCCCCC >Mature Secondary Structure SDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCEE ATNEGFPLPKSPEEIWSLDYAGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNS ECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEHHHHH LIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDKLSDGTYVVGDRENNAIRRV HHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEEECCCCCCEEEE FADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ ECCCCEEEEECCCCCCCCCCCCHHHCHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCHH LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPD HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEECCC QRYLYIAERDNNIVRCIDLMNNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDN CCEEEEEECCCCEEHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCHHHCCCCCCCCCCC AGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGRISGPASKAKFYEPWGLSVD CCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEE RKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC QMPKSYASESTGEFSAPDGTLFSDAPRSTY CCCHHHHCCCCCCCCCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA