| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is phnB [H]
Identifier: 74317222
GI number: 74317222
Start: 1263407
End: 1263844
Strand: Reverse
Name: phnB [H]
Synonym: Tbd_1204
Alternate gene names: 74317222
Gene position: 1263844-1263407 (Counterclockwise)
Preceding gene: 74317223
Following gene: 74317221
Centisome position: 43.43
GC content: 64.38
Gene sequence:
>438_bases ATGGCACGCGTCAGCCCCTATCTGAATTTTGCACGCTCAACCGAAGGCGCATTCCTGTTTTACAAATCGGTTTTCGGGAC CGATTTCATCGGGCCGATCGGCCGTTGGCGGGACATGCCGCCTGACCCGGCAACCGCCCCGCTTCCGGACGCCGACCTCG ATCTTGTCATCCACGTCGAGCTGCCGATTCTGGGCGGCCACGTGCTGATGGGCACCGATGCGCCGTCCTCGGCCGGGTTC AGCGTCACGCCGGGCAATAACGTACACATCCTGCTCGAGCCCGAGACACGGGCCGAGACCGATCGCCTGTTCGCGGCGCT CGCCGAAGGCGGCCAGGTCGAGATGCCGTTGCAGGAGATGTTCTGGGGCGGCTATTACGGCAGCCTCGCCGACCGCTTCG GCGTGCGCTGGATGTTCAATTGCGCGGAGCAGCACTGA
Upstream 100 bases:
>100_bases GCACGGGGGCTGAACCCATCGGGGCCTTCACCCGGACAAGAGGGATTCAAGGCGAGGTGCTATAGAGAACAGGATCGACG GTCTCTGGCAGGAGGACAGC
Downstream 100 bases:
>100_bases GGCGCCGCGCCGGACAATGGCTATCCGCATCGTACGCCTGGGCAGTGCGCGGACAGCCGGCGAAGGGCTGCGAGTCGGTG CGGTCAGGCGGCCGCCGCGC
Product: PhnB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MARVSPYLNFARSTEGAFLFYKSVFGTDFIGPIGRWRDMPPDPATAPLPDADLDLVIHVELPILGGHVLMGTDAPSSAGF SVTPGNNVHILLEPETRAETDRLFAALAEGGQVEMPLQEMFWGGYYGSLADRFGVRWMFNCAEQH
Sequences:
>Translated_145_residues MARVSPYLNFARSTEGAFLFYKSVFGTDFIGPIGRWRDMPPDPATAPLPDADLDLVIHVELPILGGHVLMGTDAPSSAGF SVTPGNNVHILLEPETRAETDRLFAALAEGGQVEMPLQEMFWGGYYGSLADRFGVRWMFNCAEQH >Mature_144_residues ARVSPYLNFARSTEGAFLFYKSVFGTDFIGPIGRWRDMPPDPATAPLPDADLDLVIHVELPILGGHVLMGTDAPSSAGFS VTPGNNVHILLEPETRAETDRLFAALAEGGQVEMPLQEMFWGGYYGSLADRFGVRWMFNCAEQH
Specific function: Unknown
COG id: COG2764
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790546, Length=151, Percent_Identity=29.8013245033113, Blast_Score=72, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15932; Mature: 15801
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVSPYLNFARSTEGAFLFYKSVFGTDFIGPIGRWRDMPPDPATAPLPDADLDLVIHVE CCCCCCHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE LPILGGHVLMGTDAPSSAGFSVTPGNNVHILLEPETRAETDRLFAALAEGGQVEMPLQEM CCEECCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCHHHH FWGGYYGSLADRFGVRWMFNCAEQH HCCCCCHHHHHHHCCEEEEEECCCC >Mature Secondary Structure ARVSPYLNFARSTEGAFLFYKSVFGTDFIGPIGRWRDMPPDPATAPLPDADLDLVIHVE CCCCCHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE LPILGGHVLMGTDAPSSAGFSVTPGNNVHILLEPETRAETDRLFAALAEGGQVEMPLQEM CCEECCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCHHHH FWGGYYGSLADRFGVRWMFNCAEQH HCCCCCHHHHHHHCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 7610040; 9278503 [H]