| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ubiE [C]
Identifier: 74317073
GI number: 74317073
Start: 1118802
End: 1119458
Strand: Reverse
Name: ubiE [C]
Synonym: Tbd_1055
Alternate gene names: 74317073
Gene position: 1119458-1118802 (Counterclockwise)
Preceding gene: 74317075
Following gene: 74317072
Centisome position: 38.47
GC content: 67.73
Gene sequence:
>657_bases ATGACCAGCACGCCACCCACTACGCCCACGACCCGGCTCGACGCCGCCCATTTCGACAGCAAGGCCCGCGCGTGGGACGA GAACCCGGTGTTCCAGGAACGCGGCAGCAAGATCGCCGACGCGATCCGCGCGACCGTGCCGCTGCGCCGCGACATGGCGG CGCTCGACTACGGCTGCGGGACGGGCCTGCTTTCCTTCCCGCTCAAGGATGAACTCGGCTCGATCCTGTTGGCCGACAGT TCGAGCGGAATGCTCGACGTGCTGGCCGAGAAGATCGCCGCGCAAGGCGTCGACAACATGACTCCGGTCAAGCTTGACCT GCTCGCGGACCCGCCGCCGGCGCAGCGCTTCGACCTGATCTATACGTCGATGACGCTGCACCACGTGCCCGACACGGCGC GCATCCTCGGCATCTTTCACGCGCTTCTGAAGCCCGGCGCCTATCTGTGCGTCGCCGACCTCGACAAGGAAGACGGTTCC TTCCACGGCGTCGAGGTCGACGTGCACCACGGCTTCGACCGGGCCGCGCTCGGCCAGCGCGCGACCACCGCCGGCTTCAC CGACGTGCGCTTTCAGCCCGTGTTCAGCATCAGCAAGGAACAGCCGGCCGGCACGCGCGACTACCCGGTTTTCCTGATGA CGGCACGGCGCGCCTGA
Upstream 100 bases:
>100_bases GCACTCCGTTTCAAGGAGCGAAGCGGGCATACCGCAGTCACACGGGGACGCCGGAATCCGGTGGTACCCCTCGCACATTT CCCCGGCTTACGAAAACGCC
Downstream 100 bases:
>100_bases CGCAAACGGAGGTCACGAGCATGGGTCTGGAATACATGTTTTTCGATGCGGCGTTGCGCGATCGCTTCGTCGCGTTTGCG TCGGCGCTCGGCATTCCGAG
Product: S-adenosylmethionine-dependent methyltransferase
Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]
Alternate protein names: Methyltransferase; S-Adenosylmethionine-Dependent Methyltransferase; SAM-Dependent Methyltransferase; UbiE/COQ5 Methyltransferase; S-Adenosyl-L-Methionine-Dependent Methyltransferase; SAM Dependent Methyltransferase; Pedicted SAM-Dependent Methyltransferase
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MTSTPPTTPTTRLDAAHFDSKARAWDENPVFQERGSKIADAIRATVPLRRDMAALDYGCGTGLLSFPLKDELGSILLADS SSGMLDVLAEKIAAQGVDNMTPVKLDLLADPPPAQRFDLIYTSMTLHHVPDTARILGIFHALLKPGAYLCVADLDKEDGS FHGVEVDVHHGFDRAALGQRATTAGFTDVRFQPVFSISKEQPAGTRDYPVFLMTARRA
Sequences:
>Translated_218_residues MTSTPPTTPTTRLDAAHFDSKARAWDENPVFQERGSKIADAIRATVPLRRDMAALDYGCGTGLLSFPLKDELGSILLADS SSGMLDVLAEKIAAQGVDNMTPVKLDLLADPPPAQRFDLIYTSMTLHHVPDTARILGIFHALLKPGAYLCVADLDKEDGS FHGVEVDVHHGFDRAALGQRATTAGFTDVRFQPVFSISKEQPAGTRDYPVFLMTARRA >Mature_217_residues TSTPPTTPTTRLDAAHFDSKARAWDENPVFQERGSKIADAIRATVPLRRDMAALDYGCGTGLLSFPLKDELGSILLADSS SGMLDVLAEKIAAQGVDNMTPVKLDLLADPPPAQRFDLIYTSMTLHHVPDTARILGIFHALLKPGAYLCVADLDKEDGSF HGVEVDVHHGFDRAALGQRATTAGFTDVRFQPVFSISKEQPAGTRDYPVFLMTARRA
Specific function: Methyltransferase Required For The Conversion Of Dimethylmenaquinone (Dmkh2) To Menaquinone (Mkh2) And The Conversion Of 2-Polyprenyl-6-Methoxy-1,4-Benzoquinol (Ddmqh2) To 2-Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol (Dmqh2). [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.- [C]
Molecular weight: Translated: 23680; Mature: 23549
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTPPTTPTTRLDAAHFDSKARAWDENPVFQERGSKIADAIRATVPLRRDMAALDYGCG CCCCCCCCCCCCCCHHHCCCHHHCCCCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC TGLLSFPLKDELGSILLADSSSGMLDVLAEKIAAQGVDNMTPVKLDLLADPPPAQRFDLI CCEECCCCHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE YTSMTLHHVPDTARILGIFHALLKPGAYLCVADLDKEDGSFHGVEVDVHHGFDRAALGQR EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHCCC ATTAGFTDVRFQPVFSISKEQPAGTRDYPVFLMTARRA CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure TSTPPTTPTTRLDAAHFDSKARAWDENPVFQERGSKIADAIRATVPLRRDMAALDYGCG CCCCCCCCCCCCCHHHCCCHHHCCCCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC TGLLSFPLKDELGSILLADSSSGMLDVLAEKIAAQGVDNMTPVKLDLLADPPPAQRFDLI CCEECCCCHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE YTSMTLHHVPDTARILGIFHALLKPGAYLCVADLDKEDGSFHGVEVDVHHGFDRAALGQR EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHCCC ATTAGFTDVRFQPVFSISKEQPAGTRDYPVFLMTARRA CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]
Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]
General reaction: Transferring one-carbon groups; Methyltransferases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA