Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74317075

Identifier: 74317075

GI number: 74317075

Start: 1120039

End: 1120554

Strand: Reverse

Name: 74317075

Synonym: Tbd_1057

Alternate gene names: NA

Gene position: 1120554-1120039 (Counterclockwise)

Preceding gene: 74317076

Following gene: 74317073

Centisome position: 38.51

GC content: 68.99

Gene sequence:

>516_bases
GTGACGCACGCACAGAGCTTCCCGCCGATCGCCGATACGCACGCGCGCGTCCTGATCCTCGGCAGCCTGCCCGGGCAGAC
GTCGCTCAGGATGCAGCAGTACTACGCGCAGCCGCAGAATGCGTTCTGGAAGATCATGGGACGCCTCTTCGGTGCCGGCG
CGGACGTGCCCTACGCCGAACGCTACCGCAAGCTCGTCAGGAGTGGGGTCGCGCTCTGGGACGTGTGCGCCTCCGCCGAG
CGGCCGGGCAGCCTCGATTCGGCGATCGTGACATCGAGCGTGGTGCCGAACGACTTCGCCGCGTTCCTCGCCTCGCACCC
GCATATCCATCTCGTCTGCTTCAACGGGGCGAAGGCGGCGGGCCTCTATCGCCGCCTCGTGCTGCCGGATCTGCCCGAGG
CGCCGCGGCTCGTCGCCTACCGGACACTGCCGTCGACGAGCCCGGCGCACGCGGGCATGCGCTTCGAGGAAAAACTCGCG
CACTGGTCGGTCGTCAAGGAGGCGGCCGGTCACTGA

Upstream 100 bases:

>100_bases
CGATAATGACGGCGCGGCGGGATGACACGAGCGCCGCCGACCCGAGCCTTTCCATGCCGCCCGCCTCGCCCTCCCCCAGC
TTCGTCGCCCCACCGCGATC

Downstream 100 bases:

>100_bases
AAAATGCCGGCGGTTCGCACAGTCCCGCCATTTTTCTGCCGCATTATGTCAACGGCGATTGACGCTGATCCGGCCCGGCC
CCATCAGGAGCAACGCGATC

Product: hypothetical protein

Products: NA

Alternate protein names: Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; Mug GT/U Mismatch-Specific DNA Glycosylase; T/U Mismatch-Specific DNA Glycosylase; G/U Mismatch-Specific DNA Glycosylase; GT/U Mismatch-Specific DNA Glycosylase-Like Protein; DNA Glycosylase; G/U Mismatch-Specific Uracil-DNA Glycosylase; Uracil DNA Glycosylase Superfamily; G-T/U Mismatch-Specific DNA Glycosylase-Like; YjeF-Like Protein; GT/U Mismatch-Specific Uracil/Thymine DNA-Glycosylase

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAE
RPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLA
HWSVVKEAAGH

Sequences:

>Translated_171_residues
MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAE
RPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLA
HWSVVKEAAGH
>Mature_170_residues
THAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAER
PGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAH
WSVVKEAAGH

Specific function: Unknown

COG id: COG3663

COG function: function code L; G:T/U mismatch-specific DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18690; Mature: 18558

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAE
CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
RYRKLVRSGVALWDVCASAERPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAA
HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCHH
GLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAHWSVVKEAAGH
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
THAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAE
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
RYRKLVRSGVALWDVCASAERPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAA
HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCHH
GLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAHWSVVKEAAGH
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA