Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is yrbE [C]

Identifier: 74316998

GI number: 74316998

Start: 1043700

End: 1044494

Strand: Reverse

Name: yrbE [C]

Synonym: Tbd_0980

Alternate gene names: 74316998

Gene position: 1044494-1043700 (Counterclockwise)

Preceding gene: 74317003

Following gene: 74316997

Centisome position: 35.9

GC content: 62.39

Gene sequence:

>795_bases
ATGAATTCCATTGCGGCCTCCCTCGAATCGCTCGGCGCCAAGGTCGTCGGCTGGTTCACGGTCGGCTACGCGATGTTCTC
GTTCCTCGGCAAGGCAGGCCTGCTGCTGCTCGAGCGCGAGACCTGGAACCGCGCCACCTTCGACGTCGTCGTGAAGCAGG
TCTACTTCACCGCCGTACAGATTCTGCACGTTTTTCTCGGCTACGCCCTGGTCATTTCGTGGCTGATCATAACGATCATT
CTGTCGACCGCGCGTGACTTCGGCCTGACCGCCTTCGCGAGCGAAATGACGATCCGCGTGCTCGTTCTCGAACTGCTGCC
CTTCCTCACGGCCCTGTTCGTCGCCCTGCGTTCGGGCAGCGCGATCAACACCGAAGTCGCGTTGATGCAGGTGAACAACG
AATTGGATGCGCTCGCGCACTGCAAGGTTCCACCGATGCAATTCGAGTTCCTGCCGCGCCTGATCGGCGGCGTGGTGTCG
GTCGTCACGCTCGCCGGGCTCGCCGGGCTGCTCGCGCTGCTGCTCGGCTATCTCGCGATCTACGGCGCCGGAACGGCCGG
CTTCGAGCCCTACACGCAGACCATCGCCAAGATCTTCGACTTCGGCATCCTCGCCGGCCTGGTCGTGAAGTCCGCGCTCT
TCGGCCTGGCGGTCACGCTAATCCCGGTGACCGCCGGTCTCGAGACGCCTAAGAAGCTCTTCATGGTGCCGGTGTCGGTG
CTGCGCGGCATGATGCGCGTATTCTTCGCCATTGTGGCGATCGAGGTGGTGTCATTAGCGCTCAAATACATCTGA

Upstream 100 bases:

>100_bases
GACTGCAAAACTGTATGTCGTGACCGACGCGTGCGCAAGCACGCGCGGCCGTCCTTTCGAACAATGGCGCAAGCCTCGGC
GATGACGTTAAGATGCCGCG

Downstream 100 bases:

>100_bases
CCACGTTCGCCGACCGCGACAGCCTGCGCGCCGCGGTCGCTGCATTGTCGGACCAGGTGGCGCGCGTCGCGCTCGAGCTG
CCGCTGCGGGCCAATCTCTC

Product: ABC-type transport system permease

Products: NA

Alternate protein names: ABC Transporter Permease; ABC Transporter Permease Protein; ABC-Type Transport System Permease; ABC-Type Transport System Permease Component

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII
LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS
VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV
LRGMMRVFFAIVAIEVVSLALKYI

Sequences:

>Translated_264_residues
MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII
LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS
VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV
LRGMMRVFFAIVAIEVVSLALKYI
>Mature_264_residues
MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII
LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS
VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV
LRGMMRVFFAIVAIEVVSLALKYI

Specific function: Unknown

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28443; Mature: 28443

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH
ILHVFLGYALVISWLIITIILSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVSVVTLAGLAGLLALLLGYLAI
CCCHHHHHEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRGMMRVFFAIVAIEVVSLALKYI
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH
ILHVFLGYALVISWLIITIILSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVSVVTLAGLAGLLALLLGYLAI
CCCHHHHHEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRGMMRVFFAIVAIEVVSLALKYI
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA