| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yrbE [C]
Identifier: 74316998
GI number: 74316998
Start: 1043700
End: 1044494
Strand: Reverse
Name: yrbE [C]
Synonym: Tbd_0980
Alternate gene names: 74316998
Gene position: 1044494-1043700 (Counterclockwise)
Preceding gene: 74317003
Following gene: 74316997
Centisome position: 35.9
GC content: 62.39
Gene sequence:
>795_bases ATGAATTCCATTGCGGCCTCCCTCGAATCGCTCGGCGCCAAGGTCGTCGGCTGGTTCACGGTCGGCTACGCGATGTTCTC GTTCCTCGGCAAGGCAGGCCTGCTGCTGCTCGAGCGCGAGACCTGGAACCGCGCCACCTTCGACGTCGTCGTGAAGCAGG TCTACTTCACCGCCGTACAGATTCTGCACGTTTTTCTCGGCTACGCCCTGGTCATTTCGTGGCTGATCATAACGATCATT CTGTCGACCGCGCGTGACTTCGGCCTGACCGCCTTCGCGAGCGAAATGACGATCCGCGTGCTCGTTCTCGAACTGCTGCC CTTCCTCACGGCCCTGTTCGTCGCCCTGCGTTCGGGCAGCGCGATCAACACCGAAGTCGCGTTGATGCAGGTGAACAACG AATTGGATGCGCTCGCGCACTGCAAGGTTCCACCGATGCAATTCGAGTTCCTGCCGCGCCTGATCGGCGGCGTGGTGTCG GTCGTCACGCTCGCCGGGCTCGCCGGGCTGCTCGCGCTGCTGCTCGGCTATCTCGCGATCTACGGCGCCGGAACGGCCGG CTTCGAGCCCTACACGCAGACCATCGCCAAGATCTTCGACTTCGGCATCCTCGCCGGCCTGGTCGTGAAGTCCGCGCTCT TCGGCCTGGCGGTCACGCTAATCCCGGTGACCGCCGGTCTCGAGACGCCTAAGAAGCTCTTCATGGTGCCGGTGTCGGTG CTGCGCGGCATGATGCGCGTATTCTTCGCCATTGTGGCGATCGAGGTGGTGTCATTAGCGCTCAAATACATCTGA
Upstream 100 bases:
>100_bases GACTGCAAAACTGTATGTCGTGACCGACGCGTGCGCAAGCACGCGCGGCCGTCCTTTCGAACAATGGCGCAAGCCTCGGC GATGACGTTAAGATGCCGCG
Downstream 100 bases:
>100_bases CCACGTTCGCCGACCGCGACAGCCTGCGCGCCGCGGTCGCTGCATTGTCGGACCAGGTGGCGCGCGTCGCGCTCGAGCTG CCGCTGCGGGCCAATCTCTC
Product: ABC-type transport system permease
Products: NA
Alternate protein names: ABC Transporter Permease; ABC Transporter Permease Protein; ABC-Type Transport System Permease; ABC-Type Transport System Permease Component
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV LRGMMRVFFAIVAIEVVSLALKYI
Sequences:
>Translated_264_residues MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV LRGMMRVFFAIVAIEVVSLALKYI >Mature_264_residues MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQILHVFLGYALVISWLIITII LSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGSAINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVS VVTLAGLAGLLALLLGYLAIYGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV LRGMMRVFFAIVAIEVVSLALKYI
Specific function: Unknown
COG id: COG0767
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28443; Mature: 28443
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH ILHVFLGYALVISWLIITIILSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGS HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVSVVTLAGLAGLLALLLGYLAI CCCHHHHHEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LRGMMRVFFAIVAIEVVSLALKYI HHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNSIAASLESLGAKVVGWFTVGYAMFSFLGKAGLLLLERETWNRATFDVVVKQVYFTAVQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH ILHVFLGYALVISWLIITIILSTARDFGLTAFASEMTIRVLVLELLPFLTALFVALRSGS HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AINTEVALMQVNNELDALAHCKVPPMQFEFLPRLIGGVVSVVTLAGLAGLLALLLGYLAI CCCHHHHHEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGAGTAGFEPYTQTIAKIFDFGILAGLVVKSALFGLAVTLIPVTAGLETPKKLFMVPVSV HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LRGMMRVFFAIVAIEVVSLALKYI HHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA