| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hldE [H]
Identifier: 74316980
GI number: 74316980
Start: 1024259
End: 1025203
Strand: Direct
Name: hldE [H]
Synonym: Tbd_0962
Alternate gene names: 74316980
Gene position: 1024259-1025203 (Clockwise)
Preceding gene: 74316979
Following gene: 74316981
Centisome position: 35.2
GC content: 67.72
Gene sequence:
>945_bases TTGCGTGACGCGATCGCGCGCACCCGCATCCTCGTCGCGGGTGACGTGATGCTCGACCGCTACTGGTTCGGCGAGGTTTC GCGCATTTCGCCCGAAGCGCCGGTGCCGGTCGTGCATGTCACGCGCAACGAGGATCGCATCGGCGGCGCAGGCAACGTCG CACGCAACGCCGCGGCGCTCGGTGCGCAGGTAACCCTGCTGTCGGTGGCGGGGCGCGACGAAGCCGGATTGGCCTTGCGC CGCCTGCTCGACGCCGAGCCGTTCGCCGTGCAGTTGCACGAGGACCCGGCGTATTCGACGATCACCAAGCTGCGTGTCAT CGGCCGGCAGCAGCAACTCCTGCGCGTCGATTTCGAAACCCAGCCCGGCCATGAAGTGCTCGCCGCCAAGCTCGAAGCCT TCGCTCGGCTTCTCGCGGAGTGCGACGTGGTGATTCTCTCCGACTACGGCAAGGGCGGGCTGACGCACGTCGGCCGCATG ATCGAATTGGCGCGCGACGCGAAGAAGCCTATTCTGGTCGATCCCAAGGGTGACGACTGGGCGCGTTACGCCGGTGCGAC GCTGATCACGCCGAACCGCAGCGAATTCCGCGAGATCGCGGGCGGCTGGAAATCGGAGCGCGAGCTCGCCGACAAGGCAG CGGAGGTACGTCGCAAATTCCGCTTCGACGCCCTGCTCGTGACACGCAGCGAGGAGGGCATGAGTCTCTTCGACGCCGAG GGCGCGCACCACGAAGCGACGCGCGCGCAGGAGGTGTTCGACGTCTCGGGCGCCGGCGATACCGTCATCGCTGCCCTCGC GGTTGCGTTGGGTGCGGGGGCGAGCAGCGTCGAGGCGATGCGGCTGGCGAACCGCGCCGCAGGCATCGTCGTCGGCAAGT TCGGCACCGCGGTCGCGACGGCGGACGAGGTTTTTGCAAACAGCTCAACCGGAGGACAGCCATGA
Upstream 100 bases:
>100_bases TGAAGGCGCCGTTGATCTTCGACGGCCGCAACCTCTACGAGCCGCGCGCGATGCGCGAAATGGGCTTCGACTATTTCCCG ATCGGGCGCCCGTGACGCCG
Downstream 100 bases:
>100_bases GCCAGTACACCGTGGTCACCGGCGCCGCCGGTTTCATCGGCGCCAACATCGTCAAGGCGCTGAACGAGCGCGGCGAGACG AACATCATCGCAGTCGACAA
Product: D-alpha,beta-D-heptose 7-phosphate 1-kinase
Products: NA
Alternate protein names: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 7-phosphotransferase; D-beta-D-heptose 1-phosphate adenosyltransferase [H]
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MRDAIARTRILVAGDVMLDRYWFGEVSRISPEAPVPVVHVTRNEDRIGGAGNVARNAAALGAQVTLLSVAGRDEAGLALR RLLDAEPFAVQLHEDPAYSTITKLRVIGRQQQLLRVDFETQPGHEVLAAKLEAFARLLAECDVVILSDYGKGGLTHVGRM IELARDAKKPILVDPKGDDWARYAGATLITPNRSEFREIAGGWKSERELADKAAEVRRKFRFDALLVTRSEEGMSLFDAE GAHHEATRAQEVFDVSGAGDTVIAALAVALGAGASSVEAMRLANRAAGIVVGKFGTAVATADEVFANSSTGGQP
Sequences:
>Translated_314_residues MRDAIARTRILVAGDVMLDRYWFGEVSRISPEAPVPVVHVTRNEDRIGGAGNVARNAAALGAQVTLLSVAGRDEAGLALR RLLDAEPFAVQLHEDPAYSTITKLRVIGRQQQLLRVDFETQPGHEVLAAKLEAFARLLAECDVVILSDYGKGGLTHVGRM IELARDAKKPILVDPKGDDWARYAGATLITPNRSEFREIAGGWKSERELADKAAEVRRKFRFDALLVTRSEEGMSLFDAE GAHHEATRAQEVFDVSGAGDTVIAALAVALGAGASSVEAMRLANRAAGIVVGKFGTAVATADEVFANSSTGGQP >Mature_314_residues MRDAIARTRILVAGDVMLDRYWFGEVSRISPEAPVPVVHVTRNEDRIGGAGNVARNAAALGAQVTLLSVAGRDEAGLALR RLLDAEPFAVQLHEDPAYSTITKLRVIGRQQQLLRVDFETQPGHEVLAAKLEAFARLLAECDVVILSDYGKGGLTHVGRM IELARDAKKPILVDPKGDDWARYAGATLITPNRSEFREIAGGWKSERELADKAAEVRRKFRFDALLVTRSEEGMSLFDAE GAHHEATRAQEVFDVSGAGDTVIAALAVALGAGASSVEAMRLANRAAGIVVGKFGTAVATADEVFANSSTGGQP
Specific function: Catalyzes the ADP transfer to D-glycero-D-manno-heptose 1-phosphate, yielding ADP-D,D-heptose [H]
COG id: COG2870
COG function: function code M; ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789432, Length=306, Percent_Identity=49.3464052287582, Blast_Score=275, Evalue=3e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023030 - InterPro: IPR011611 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR011913 - InterPro: IPR011914 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2; PF00294 PfkB [H]
EC number: 2.7.-.- [C]
Molecular weight: Translated: 33610; Mature: 33610
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDAIARTRILVAGDVMLDRYWFGEVSRISPEAPVPVVHVTRNEDRIGGAGNVARNAAAL CCCHHHHHEEEEECHHHHHHHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH GAQVTLLSVAGRDEAGLALRRLLDAEPFAVQLHEDPAYSTITKLRVIGRQQQLLRVDFET CCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCC QPGHEVLAAKLEAFARLLAECDVVILSDYGKGGLTHVGRMIELARDAKKPILVDPKGDDW CCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCH ARYAGATLITPNRSEFREIAGGWKSERELADKAAEVRRKFRFDALLVTRSEEGMSLFDAE HHHCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEECC GAHHEATRAQEVFDVSGAGDTVIAALAVALGAGASSVEAMRLANRAAGIVVGKFGTAVAT CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCHHHH ADEVFANSSTGGQP HHHHHCCCCCCCCC >Mature Secondary Structure MRDAIARTRILVAGDVMLDRYWFGEVSRISPEAPVPVVHVTRNEDRIGGAGNVARNAAAL CCCHHHHHEEEEECHHHHHHHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH GAQVTLLSVAGRDEAGLALRRLLDAEPFAVQLHEDPAYSTITKLRVIGRQQQLLRVDFET CCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCC QPGHEVLAAKLEAFARLLAECDVVILSDYGKGGLTHVGRMIELARDAKKPILVDPKGDDW CCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCH ARYAGATLITPNRSEFREIAGGWKSERELADKAAEVRRKFRFDALLVTRSEEGMSLFDAE HHHCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEECC GAHHEATRAQEVFDVSGAGDTVIAALAVALGAGASSVEAMRLANRAAGIVVGKFGTAVAT CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCHHHH ADEVFANSSTGGQP HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]