Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is mod [H]

Identifier: 74316954

GI number: 74316954

Start: 995552

End: 997285

Strand: Direct

Name: mod [H]

Synonym: Tbd_0936

Alternate gene names: 74316954

Gene position: 995552-997285 (Clockwise)

Preceding gene: 74316953

Following gene: 74316955

Centisome position: 34.21

GC content: 54.27

Gene sequence:

>1734_bases
ATGAGCAAGCAAAAACTAGAACTCACCTGGATCGGGAAGGAGAAGCGGCCCAAATTGGAGCCGCGCATCTTGCTCGAAGA
TCCAGAGAAGTCATATCACGCCAAGCATCGCGTGTCGGACAACGACATCTTCGACAACCGACTGATCTTCGGTGACAACC
TGCTTGCGCTGAAAGCATTGGAGCAAGAGTTCTCCGGCAAAGTGAAGTGCGTGTTCATTGACCCACCGTACAACACCGGT
AGCGCATTTGCACAATATGATGATGGTCTTGAGCACTCGATTTGGCTTGGCTTAGTACGGGATCGGCTAGAAATCATCAG
GCGTCTGCTTTCGGACGATGGCTCGCTATGGATTTCTATTGATGACAACGAGGCTCACTATCTTAAGGTCTTGTGCGACG
AGATTTTTGGTCGCAAGTGTTTCGTTACGTCATTTATCTGGAAGAAGGTCGACAGCCCAAATGACAACAAGGGCGCCCTT
TCCCCAGATCATGAATACATTCTTTGCTATGTAAAGAATCCTGACTCGATTTATTTTCGACCGAAGCAGGATGAGTCAAT
CCTAAATGCATACCGGCAGCCGGACGCGGAATCGGACAGGCCGTACCGTGACCGTCTCCTAAAGAAAAACGGGAAGAATA
GTCTTCGGATCGACCGCCCGTCGATGTATTTCCCGATCAAGGGGCCAGACGGCGTGGATGTTTACCCCATTCACGATGAC
GGCCAAGAAGCCCGATGGGCAATGGGGAAAAAGGGTGTTGATGAGCTGATAGCGAAGGGAGAGCTTGTTTGGAAGCAAAG
GGAAAGCGGCGGAGTACTGCGGTGGGTTCCTTACACAAGAGAATATGCTCCCGACGCTCCTACGCGCCCTTGGCCAACAA
TCTGGTCAGACTTGCACACGACTCGACAAACTAAGGCTCATCAAAGATCTGTTTTGGAGGGCGTTCAAGCATTTGAAACC
CCGAAGCCAGAAGACTTGGTTTCCCGTATTCTTAGTATTTCAACGAATCCAGGAGACTGGGTTCTTGACTCATTTGCGGG
ATCTGGCACCACTGGAGCAGCCGCTCATAAAATGGGACGGCGCTGGATAATGGTGGAGCTTGAGGAAACTTGCCATACAC
ACATCATTCCGCGTCTCAGGAAGGTAATTGACGGCGAAGATAAGGGCGGCGTCACAGAGGCTCTAAGTTGGCACGGCGGC
GGCGGCTTCCGCTATTACCGTCTTGCCCCTAGCCTGATCGTCAACGACCGCTGGGGCAACCCGGTCATCAATCCCGAATA
CAACGCTGCGCAACTGGCCGAGGCGCTGGCCAAGCTGGAAGGCTTCAACTACGCGCCGTCGGAAACGCATTGGTGGCAGC
ACGGCCACTCCAGCGAGCGAGACTTCATCTACGTCACCACGCAGAACCTGTCCGCTGAGCAACTGCAAGCCCTGGCCGAT
GAAGTCGGCCCAGAGCGGAGCCTGTTGGTGTGCTGCGCCGCTTTCCACGGAGTCACGGCGGCAAAGGCGGCGGAGCGCTG
GCCGAACCTGACACTGAAGAAGATTCCGAAGATGGTGCTGGCCCGCTGCCATTGGGGCCGCGATGACTACAGCCTGAATG
TGACCAACCTGCCGATGGCGGAGATTGAAAAATCCGAGCCTGCGCCCCCTGGCAATAGCTTCAAGAACACTAAAAGCAGA
AAAGCGGCCCTCGCTAACGCGGGACAGGGCGGCCTGTTTGGGGAGAACGAATAA

Upstream 100 bases:

>100_bases
AGAAATCATCTCTTACGACAAGCTCCTCAAAGATGCCGCGCGCAGAAACCGCGTGCTATTTGAGAAGCTTGGCCTGCACA
AGAATTAAGGCGGCACGACC

Downstream 100 bases:

>100_bases
TGAACGCCCGCGTCCTGCACGCCGTCACCGGTCGTCTGTCTCTTCGTCCGCCCCAGGCGGAGTCGCTCACCAAACTGGTT
CGCGCGCTTGATGCCGCGCC

Product: adenine specific DNA methylase MOD

Products: NA

Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTG
SAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGAL
SPDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD
GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFET
PKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGG
GGFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD
EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSR
KAALANAGQGGLFGENE

Sequences:

>Translated_577_residues
MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTG
SAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGAL
SPDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD
GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFET
PKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGG
GGFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD
EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSR
KAALANAGQGGLFGENE
>Mature_576_residues
SKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTGS
AFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALS
PDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDDG
QEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFETP
KPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGG
GFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALADE
VGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSRK
AALANAGQGGLFGENE

Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002295
- InterPro:   IPR002941
- InterPro:   IPR002052 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 65349; Mature: 65218

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKAL
CCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEECCCHHHHHHH
EQEFSGKVKCVFIDPPYNTGSAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISI
HHHHCCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
DDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALSPDHEYILCYVKNPDSIYFR
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEC
PKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD
CCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCEEEEECCC
GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHT
CCHHHHHHCCCCHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
TRQTKAHQRSVLEGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHCCCCCCCCCHHHHHCCC
RWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGGGFRYYRLAPSLIVNDRWGN
EEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCEEEEEECCEEEEECCCCC
PVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCHHHHHHHHH
EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMA
HHCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHH
EIEKSEPAPPGNSFKNTKSRKAALANAGQGGLFGENE
HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKAL
CCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEECCCHHHHHHH
EQEFSGKVKCVFIDPPYNTGSAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISI
HHHHCCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
DDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALSPDHEYILCYVKNPDSIYFR
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEC
PKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD
CCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCEEEEECCC
GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHT
CCHHHHHHCCCCHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
TRQTKAHQRSVLEGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHCCCCCCCCCHHHHHCCC
RWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGGGFRYYRLAPSLIVNDRWGN
EEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCEEEEEECCEEEEECCCCC
PVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCHHHHHHHHH
EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMA
HHCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHH
EIEKSEPAPPGNSFKNTKSRKAALANAGQGGLFGENE
HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387444; 11677609 [H]