| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is mod [H]
Identifier: 74316954
GI number: 74316954
Start: 995552
End: 997285
Strand: Direct
Name: mod [H]
Synonym: Tbd_0936
Alternate gene names: 74316954
Gene position: 995552-997285 (Clockwise)
Preceding gene: 74316953
Following gene: 74316955
Centisome position: 34.21
GC content: 54.27
Gene sequence:
>1734_bases ATGAGCAAGCAAAAACTAGAACTCACCTGGATCGGGAAGGAGAAGCGGCCCAAATTGGAGCCGCGCATCTTGCTCGAAGA TCCAGAGAAGTCATATCACGCCAAGCATCGCGTGTCGGACAACGACATCTTCGACAACCGACTGATCTTCGGTGACAACC TGCTTGCGCTGAAAGCATTGGAGCAAGAGTTCTCCGGCAAAGTGAAGTGCGTGTTCATTGACCCACCGTACAACACCGGT AGCGCATTTGCACAATATGATGATGGTCTTGAGCACTCGATTTGGCTTGGCTTAGTACGGGATCGGCTAGAAATCATCAG GCGTCTGCTTTCGGACGATGGCTCGCTATGGATTTCTATTGATGACAACGAGGCTCACTATCTTAAGGTCTTGTGCGACG AGATTTTTGGTCGCAAGTGTTTCGTTACGTCATTTATCTGGAAGAAGGTCGACAGCCCAAATGACAACAAGGGCGCCCTT TCCCCAGATCATGAATACATTCTTTGCTATGTAAAGAATCCTGACTCGATTTATTTTCGACCGAAGCAGGATGAGTCAAT CCTAAATGCATACCGGCAGCCGGACGCGGAATCGGACAGGCCGTACCGTGACCGTCTCCTAAAGAAAAACGGGAAGAATA GTCTTCGGATCGACCGCCCGTCGATGTATTTCCCGATCAAGGGGCCAGACGGCGTGGATGTTTACCCCATTCACGATGAC GGCCAAGAAGCCCGATGGGCAATGGGGAAAAAGGGTGTTGATGAGCTGATAGCGAAGGGAGAGCTTGTTTGGAAGCAAAG GGAAAGCGGCGGAGTACTGCGGTGGGTTCCTTACACAAGAGAATATGCTCCCGACGCTCCTACGCGCCCTTGGCCAACAA TCTGGTCAGACTTGCACACGACTCGACAAACTAAGGCTCATCAAAGATCTGTTTTGGAGGGCGTTCAAGCATTTGAAACC CCGAAGCCAGAAGACTTGGTTTCCCGTATTCTTAGTATTTCAACGAATCCAGGAGACTGGGTTCTTGACTCATTTGCGGG ATCTGGCACCACTGGAGCAGCCGCTCATAAAATGGGACGGCGCTGGATAATGGTGGAGCTTGAGGAAACTTGCCATACAC ACATCATTCCGCGTCTCAGGAAGGTAATTGACGGCGAAGATAAGGGCGGCGTCACAGAGGCTCTAAGTTGGCACGGCGGC GGCGGCTTCCGCTATTACCGTCTTGCCCCTAGCCTGATCGTCAACGACCGCTGGGGCAACCCGGTCATCAATCCCGAATA CAACGCTGCGCAACTGGCCGAGGCGCTGGCCAAGCTGGAAGGCTTCAACTACGCGCCGTCGGAAACGCATTGGTGGCAGC ACGGCCACTCCAGCGAGCGAGACTTCATCTACGTCACCACGCAGAACCTGTCCGCTGAGCAACTGCAAGCCCTGGCCGAT GAAGTCGGCCCAGAGCGGAGCCTGTTGGTGTGCTGCGCCGCTTTCCACGGAGTCACGGCGGCAAAGGCGGCGGAGCGCTG GCCGAACCTGACACTGAAGAAGATTCCGAAGATGGTGCTGGCCCGCTGCCATTGGGGCCGCGATGACTACAGCCTGAATG TGACCAACCTGCCGATGGCGGAGATTGAAAAATCCGAGCCTGCGCCCCCTGGCAATAGCTTCAAGAACACTAAAAGCAGA AAAGCGGCCCTCGCTAACGCGGGACAGGGCGGCCTGTTTGGGGAGAACGAATAA
Upstream 100 bases:
>100_bases AGAAATCATCTCTTACGACAAGCTCCTCAAAGATGCCGCGCGCAGAAACCGCGTGCTATTTGAGAAGCTTGGCCTGCACA AGAATTAAGGCGGCACGACC
Downstream 100 bases:
>100_bases TGAACGCCCGCGTCCTGCACGCCGTCACCGGTCGTCTGTCTCTTCGTCCGCCCCAGGCGGAGTCGCTCACCAAACTGGTT CGCGCGCTTGATGCCGCGCC
Product: adenine specific DNA methylase MOD
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 577; Mature: 576
Protein sequence:
>577_residues MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTG SAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGAL SPDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFET PKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGG GGFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSR KAALANAGQGGLFGENE
Sequences:
>Translated_577_residues MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTG SAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGAL SPDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFET PKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGG GGFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSR KAALANAGQGGLFGENE >Mature_576_residues SKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKALEQEFSGKVKCVFIDPPYNTGS AFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISIDDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALS PDHEYILCYVKNPDSIYFRPKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDDG QEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHTTRQTKAHQRSVLEGVQAFETP KPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGRRWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGG GFRYYRLAPSLIVNDRWGNPVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALADE VGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMAEIEKSEPAPPGNSFKNTKSRK AALANAGQGGLFGENE
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 65349; Mature: 65218
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKAL CCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEECCCHHHHHHH EQEFSGKVKCVFIDPPYNTGSAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISI HHHHCCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE DDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALSPDHEYILCYVKNPDSIYFR CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEC PKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD CCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCEEEEECCC GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHT CCHHHHHHCCCCHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH TRQTKAHQRSVLEGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHCCCCCCCCCHHHHHCCC RWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGGGFRYYRLAPSLIVNDRWGN EEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCEEEEEECCEEEEECCCCC PVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCHHHHHHHHH EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMA HHCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHH EIEKSEPAPPGNSFKNTKSRKAALANAGQGGLFGENE HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVSDNDIFDNRLIFGDNLLALKAL CCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEECCCHHHHHHH EQEFSGKVKCVFIDPPYNTGSAFAQYDDGLEHSIWLGLVRDRLEIIRRLLSDDGSLWISI HHHHCCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE DDNEAHYLKVLCDEIFGRKCFVTSFIWKKVDSPNDNKGALSPDHEYILCYVKNPDSIYFR CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEC PKQDESILNAYRQPDAESDRPYRDRLLKKNGKNSLRIDRPSMYFPIKGPDGVDVYPIHDD CCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCEEEEECCC GQEARWAMGKKGVDELIAKGELVWKQRESGGVLRWVPYTREYAPDAPTRPWPTIWSDLHT CCHHHHHHCCCCHHHHHHCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH TRQTKAHQRSVLEGVQAFETPKPEDLVSRILSISTNPGDWVLDSFAGSGTTGAAAHKMGR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHCCCCCCCCCHHHHHCCC RWIMVELEETCHTHIIPRLRKVIDGEDKGGVTEALSWHGGGGFRYYRLAPSLIVNDRWGN EEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCEEEEEECCEEEEECCCCC PVINPEYNAAQLAEALAKLEGFNYAPSETHWWQHGHSSERDFIYVTTQNLSAEQLQALAD CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCHHHHHHHHH EVGPERSLLVCCAAFHGVTAAKAAERWPNLTLKKIPKMVLARCHWGRDDYSLNVTNLPMA HHCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHH EIEKSEPAPPGNSFKNTKSRKAALANAGQGGLFGENE HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]